DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and barhl2

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_991303.1 Gene:barhl2 / 100001699 ZFINID:ZDB-GENE-050913-153 Length:364 Species:Danio rerio


Alignment Length:494 Identity:110/494 - (22%)
Similarity:149/494 - (30%) Gaps:197/494 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 LEGSELKNAAAAAAAAAHHGSDLSHHSASESTS------GHRGQGSHTSPSALSPTPAGVSADEH 266
            :|||          :.|..|.|....:.:..||      ...|..|.|:......||:..|..: 
Zfish     1 MEGS----------SGASFGIDTILSTTNSGTSVLMNGDFRLGDSSRTADFRSQATPSPCSEID- 54

  Fly   267 HNGSGTGGGAGEADHHSTTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQA----VAPLPLAH 327
                 |.|.|..:....|.||  |..|..|....|..|||        ||.||    ::|.|...
Zfish    55 -----TVGTAPSSPISVTMEH--PEPHLVQDSLQHHHHHH--------HHSQAQSLQLSPQPHLL 104

  Fly   328 HQSGEAQSHAHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQH 392
            .|:|.|...|.::.....:|......||.|    .|..::|            |.||..:|   .
Zfish   105 GQAGCAPRTATSSFLIKDILGDSKPLAACA----PYSTSVP------------SPHHSPKT---E 150

  Fly   393 SGRSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVG 457
            ||                .:||...|...:                                   
Zfish   151 SG----------------TAPDGIRPKLEQ----------------------------------- 164

  Fly   458 DALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDID 522
                                            :.|...|.               ..|.|:.|:.
Zfish   165 --------------------------------DENRSKLD---------------KRDDIQSDLK 182

  Fly   523 DVDDADGSGGGDANGSDGLP----NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIR 583
            .::.....|..:.:.|...|    .|.||.|..|:..|..:|||.|.:|:|||..:|..||:.:.
Zfish   183 CLNGTKEEGDREISSSRDSPPVRSKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 247

  Fly   584 LTPTQVKIWFQNHRYKTKRAQNEKGYE-----GHPGLLHGHATHP--HHPSAL------------ 629
            ||.||||.|:||.|.|.|| |...|.|     |:...|......|  :|||.|            
Zfish   248 LTDTQVKTWYQNRRTKWKR-QTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGTVDSTTAAAAA 311

  Fly   630 ---------------PSPRRVAVP-VLVR----NGKPCL 648
                           ||.:|..|| ||:.    .|:|.|
Zfish   312 AAMYSSMYRTPSTPHPSLQRPLVPRVLIHGLGPGGQPAL 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 27/55 (49%)
barhl2NP_991303.1 Homeodomain 210..266 CDD:459649 27/55 (49%)

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