DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4293 and erv-46

DIOPT Version :9

Sequence 1:NP_001033816.1 Gene:CG4293 / 31001 FlyBaseID:FBgn0024983 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001369981.1 Gene:erv-46 / 181652 WormBaseID:WBGene00010725 Length:380 Species:Caenorhabditis elegans


Alignment Length:397 Identity:95/397 - (23%)
Similarity:172/397 - (43%) Gaps:60/397 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 NLLEFAKNLDAFKKVPEKYTETSEIGGTLSLLSRLLIVYLVYTELHYYWHETDIVYQFEPDIALD 77
            :||...|:.||::|..:.:...:..||.::|::.:.||.|:..|...:.....:.:.|......|
 Worm     2 SLLWSLKHFDAYRKPMDDFRVKTLSGGLVTLIATIAIVLLIVLETKQFLSTEVLEHLFVDSTTSD 66

  Fly    78 EQVQMHVDIT-VAMPCASLSGVDLMD---ETQQ----DVFAYGTLQREGVWWEMSEHDRLQFQAI 134
            |:|.:..||| ..:||..:: ||:||   |.|:    |::.. .|..||  ..:||    ..|.|
 Worm    67 ERVHIEFDITFTKLPCNFIT-VDVMDVSSEAQENINDDIYRL-RLDPEG--RNISE----SAQKI 123

  Fly   135 QI-QNHYLREEFHSVADVLFKDIMRDNHPARESASKAPAAPPPGALPLSVDLHGRHNVQ------ 192
            :| ||....|....:.:|             :..|...||..........|:...:.|:      
 Worm   124 EINQNKTSVETTDVIQEV-------------KCGSCYGAAADGICCNTCDDVKSAYAVKGWQVNI 175

  Fly   193 ---------------PESKFDACRLHGTLGINKVAGVLHLVGGAQPVVGLFEDHWMIELRRMPAN 242
                           .|.|.:.||::||:.:.||||..||..|..........|.:..|..:..:
 Worm   176 EEVEQCKNDKWVKEFNEHKNEGCRVYGTVKVAKVAGNFHLAPGDPHQAMRSHVHDLHNLDPVKFD 240

  Fly   243 FTHRINRLSFGQ-YSGRIVQPLEGDEIVIHEEATTVQYFLKVVPTEIHQTFTTI-YAFQYAVTEN 305
            .:|.:|.:|||: :.|: ..||:|.....:......||::|||||........: .:.|::||.:
 Worm   241 ASHTVNHVSFGKSFPGK-NYPLDGKVNTDNRGGIMYQYYVKVVPTRYDYLDGRVDQSHQFSVTTH 304

  Fly   306 VRKLDSERNSYGSPGIYFKYDWSALKIIVRNDRDHLVTFAIRLCSIISGIIVISGAINALLLS-- 368
            .:.|...::  |.||.:.:|::|.|.:.....|....:|.:.||:|:.|:..::..::..:..  
 Worm   305 KKDLGFRQS--GLPGFFLQYEFSPLMVQYEEFRQSFASFLVSLCAIVGGVFAMAQLVDITIYHSS 367

  Fly   369 --IRSRL 373
              ::||:
 Worm   368 RYMKSRI 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4293NP_001033816.1 ERGIC_N 19..104 CDD:290561 24/88 (27%)
COPIIcoated_ERV <200..349 CDD:285244 41/150 (27%)
erv-46NP_001369981.1 ERGIC_N 7..97 CDD:404692 25/90 (28%)
COPIIcoated_ERV 146..360 CDD:400361 51/216 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0445
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1318747at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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