DRSC/TRiP Functional Genomics Resources

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Protein Alignment elav and RBP47A

DIOPT Version :9

Sequence 1:NP_001245447.1 Gene:elav / 31000 FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001321909.1 Gene:RBP47A / 841384 AraportID:AT1G49600 Length:450 Species:Arabidopsis thaliana


Alignment Length:471 Identity:128/471 - (27%)
Similarity:184/471 - (39%) Gaps:117/471 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TNAAAAPVQNAAAVAAAAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQ-------QA 90
            |:|...|...........|.||||..|     ||||...|:....||....:||||       |.
plant    17 TSAGTTPPPPLQQSTPPPQQQQQQQWQ-----QQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQY 76

  Fly    91 VVAQQAVVQQQQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNY 155
            ....||..||..|...|..||   ||....|.|| ||           .|.:|..:.:| |.|..
plant    77 APYNQAAYQQHPQFQYAAYQQ---QQQQHHQSQQ-QP-----------RGGSGGDDVKT-LWVGD 125

  Fly   156 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAV 220
            |...|.|..:.:.||...|:.|||:||:|...             ||.|||||.::....||:|:
plant   126 LLHWMDETYLHTCFSHTNEVSSVKVIRNKQTC-------------QSEGYGFVEFLSRSAAEEAL 177

  Fly   221 NVLNGLRLQN--KTIKVSFA------RPSSDAIKGANLYVSGL-PKTMTQQELEAIFAPFGAIIT 276
            ...:|:.:.|  :..::::|      :.:|:.....:::|..| |.......||.....:.::..
plant   178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKG 242

  Fly   277 SRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQL 341
            ::::.:: |..::||.||:||....|.:||:..:||...||                        
plant   243 AKVVIDS-NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSS------------------------ 282

  Fly   342 PAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGG------ 400
                     |::...:.||  |..|.:....|               :.|.|||.|.||      
plant   283 ---------RQMRVGIATP--KRAAAYGQQNG---------------SQALTLAGGHGGNGSMSD 321

  Fly   401 ----AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461
                ...||:..|..:..|..|.|.|..||.|.||||   |..   ||.|||...|...|..||.
plant   322 GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVG---KGCGFVQFANRQSAEEAIG 380

  Fly   462 ALNGYTMGNRVLQVSF 477
            .|||..:|...:::|:
plant   381 NLNGTVIGKNTVRLSW 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 90/351 (26%)
RBP47ANP_001321909.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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