Protein Alignment elav and elavl1a

DIOPT Version :9

• Sequence 1: NP_001245447.1
• Gene: elav / 31000
• FlyBaseID: FBgn0260400
• Length: 483
• Species: Drosophila melanogaster
• Sequence 2: XP_005171324.1
• Gene: elavl1a / 30736
• ZFINID: ZDB-GENE-990415-245
• Length: 340
• Species: Danio rerio
• Alignment Length: 338
• Identity: 172/338 - (50%)
• Similarity: 230/338 - (68%)
• Gaps: 31/338 - (9%)

  Fly   146 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210
            :::||||||||||.|::||:||||||:||:||.||||||             ..|.|||||||||
Zfish    31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDK-------------VAGHSLGYGFVNY 82

  Fly   211 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAII 275
            :.|.|||:|::.|||||||:||||||:||||||:||.||||:|||||||||:::|.:|..:|.||
Zfish    83 LNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRII 147

  Fly   276 TSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKI-IQP 339
            .||:|.:..:.. ::||.|||||||.||..||..|||..|....:.:.|||:.:|...... :.|
Zfish   148 NSRVLVDQASGL-SRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVIP 211

  Fly   340 QLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPI 404
            |    :..|..||.||.:|....:  .|||||:.|.:..|          :...:.......:.|
Zfish   212 Q----VYHQQSRRFGGPVHHQAQR--FRFSPMSVDHMSGM----------SGVNVPGNSSSGWCI 260

  Fly   405 FIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMG 469
            |||||..:.:|..|||:|||||||.:||:::|..||:|||:|||:||:|:||||||.:||||.:|
Zfish   261 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLG 325

  Fly   470 NRVLQVSFKTNKA 482
            :::|||||||:|:
Zfish   326 DKILQVSFKTSKS 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
elav	NP_001245447.1	ELAV_HUD_SF	146..483	CDD:273741	172/338 (51%)
elavl1a	XP_005171324.1	ELAV_HUD_SF	31..340	CDD:273741	172/338 (51%)
		RRM1_Hu	33..110	CDD:241094	57/89 (64%)
		RRM2_HuR	120..203	CDD:241217	42/83 (51%)
		RRM3_HuR	257..340	CDD:241097	50/82 (61%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0145
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H101992
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG55893
OrthoDB	1	1.010	-	-		D425303at33208
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10352
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X326
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	11	10.890