DRSC/TRiP Functional Genomics Resources

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Protein Alignment elav and Raver2

DIOPT Version :9

Sequence 1:NP_001245447.1 Gene:elav / 31000 FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_898845.1 Gene:Raver2 / 242570 MGIID:2443623 Length:673 Species:Mus musculus


Alignment Length:448 Identity:93/448 - (20%)
Similarity:159/448 - (35%) Gaps:107/448 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 AAAAAAVAATNAAAAPVQNAAAVAAAAQLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQ 88
            ||.........:.:.|....|..||...|:..:|  |.|..|:      |||....:.::|..::
Mouse     2 AARGGGAGGAGSGSGPSAGTAGEAAEPALRPGEV--AALHPQE------VAARLQRMRRELSNRR 58

  Fly    89 QAVVAQQAVVQQQQQQAAAVVQQAAVQQAVVPQPQQAQPNT--NG-NAGSGSQNGSNGS------ 144
            : ::.:........|:...::|...::...|.:.::....|  || .|.|..|.....|      
Mouse    59 K-ILVKNLPQDSSSQEVHELLQDYELKYCYVDRNKRTAFVTLLNGEQAQSAIQRFHQFSFRGREL 122

  Fly   145 ----TETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 205
                ..|...|.:..||.:.|.:|...|..:.|.||...|:  .|:|           .|.|.||
Mouse   123 TVQLQPTDALLCITNLPISFTLEEFEELVRAYGNIERCFLV--YSEV-----------TGHSKGY 174

  Fly   206 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR------PSSDAIKGANLYVSGLPKTMT-QQE 263
            |||.|::...|.:|...|.|.::....:   ||:      .:|:.|....|.:..||...: .:|
Mouse   175 GFVEYMKKDFAAKARLELLGRQMGASAL---FAQWMDVNLLASELIHSKCLCIDKLPSDYSDSEE 236

  Fly   264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGF--IRFDKREEATRAIIALNGTT------------ 314
            |..:|:.....:..::.|:.|    :.|.||  :.:...|.|.......:|.|            
Mouse   237 LLQLFSGIHKPVFCQLAQDEG----SHGGGFAVVEYSTAEHAEEVQQVADGITIKGSQVQLSFCA 297

  Fly   315 ---PSSCT----------------------DPI-VVKFSNTPGSTSKIIQPQLPAFLNPQLVRRI 353
               |...|                      :|: ::|..|.|.....::||||           .
Mouse   298 PGAPGRSTLAVLIAAQRAMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQL-----------C 351

  Fly   354 GGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAP 411
            |.||     |.:...:|....:|...||:.:...:.|..  :|..|....:.:.||:|
Mouse   352 GRAM-----KPVLGVAPSLSHLLSPSLPSAILHFSKAQQ--SSAVGNTSSLILQNLSP 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 68/313 (22%)
Raver2NP_898845.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 7/31 (23%)
RRM_SF 59..128 CDD:302621 10/69 (14%)
RRM2_RAVER2 132..208 CDD:241110 26/91 (29%)
RRM_SF 218..314 CDD:302621 17/99 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..549
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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