DRSC/TRiP Functional Genomics Resources

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Protein Alignment elav and exc-7

DIOPT Version :9

Sequence 1:NP_001245447.1 Gene:elav / 31000 FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_496057.1 Gene:exc-7 / 174506 WormBaseID:WBGene00001368 Length:456 Species:Caenorhabditis elegans


Alignment Length:431 Identity:181/431 - (41%)
Similarity:235/431 - (54%) Gaps:114/431 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210
            |::||||:|||||.||::|:||||:|:|||||.||:|||             ..|||||||||||
 Worm    39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDK-------------VTGQSLGYGFVNY 90

  Fly   211 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAII 275
            ||.:||.:||:..|||||||||||||:||||:|.|||:||||||:||:||..|||:||.|||.||
 Worm    91 VREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQII 155

  Fly   276 TSRILQNAGNDT-QTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTS----- 334
            |||||.:  |.| .:|||||:||||::||..||..|||:.||.|::.|.|||:|.|.|.:     
 Worm   156 TSRILSD--NVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPASNNPKGLL 218

  Fly   335 ---KIIQP------QLPAFLNPQLVRRIGGAM----HTPVNKGLARFSPMAGDMLDVMLPN---- 382
               :.:|.      .|...|....:|...|.:    |.|:.... |:||| |.:..|..|.    
 Worm   219 SDLEAVQQAATTLVPLSTILGAPTLRATAGGIGPMHHAPITSKY-RYSPM-GAITAVSQPTATLP 281

  Fly   383 ----------------------------------------------------------------- 382
                                                                             
 Worm   282 ADYLTTSALLQMSQLNALAGLNPFATATAVPDFTASLIAHQQQQHAVAQQHAAQTASPPATNGQV 346

  Fly   383 -GLGA-------AAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTT 439
             ||.|       :|:.|.||.......|.:|:|||:.:|::..|||||..|||:.:|||::| .|
 Worm   347 AGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LT 410

  Fly   440 NQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTN 480
            .|||||.||||:||.||..|:.:|||..:..:.|||.||::
 Worm   411 QQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSS 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 181/431 (42%)
exc-7NP_496057.1 ELAV_HUD_SF 39..455 CDD:273741 181/431 (42%)
RRM1_Hu 41..118 CDD:241094 57/89 (64%)
RRM2_Hu 128..206 CDD:241096 49/79 (62%)
RRM3_Hu 373..449 CDD:240823 39/76 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I5464
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I1971
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55893
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - otm14623
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.840

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