DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment svr and cpm

DIOPT Version :10

Sequence 1:NP_996319.1 Gene:svr / 30998 FlyBaseID:FBgn0004648 Length:1439 Species:Drosophila melanogaster
Sequence 2:NP_001017591.1 Gene:cpm / 550253 ZFINID:ZDB-GENE-041210-191 Length:446 Species:Danio rerio


Alignment Length:377 Identity:175/377 - (46%)
Similarity:235/377 - (62%) Gaps:19/377 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 KYEHHNFTAMESYLRAISSSYPSLTRLYSIGKSVQGRDLWVLEIFATPGSHVPGVPEFKYVANMH 517
            ::.:||...||.||:.::..||.:|.|:|||:||:||:||||.:...|..|..|:||||||.|:|
Zfish    18 EFRYHNTVQMEQYLKDVNKMYPHITHLHSIGQSVEGRELWVLILGQHPREHRTGIPEFKYVGNIH 82

  Fly   518 GNEVVGKELLLILTKYMLERYGNDDRITKLVNGTRMHFLYSMNPDGYEISIEGDRTGGVGRANAH 582
            ||||||:.|||.|..|:...||:|..:|:|::.:|:|.|.||||||:| |.:.|....|||.|.:
Zfish    83 GNEVVGRVLLLQLVNYLTSHYGSDSVVTRLLDSSRVHILPSMNPDGFE-SSKPDCIYTVGRYNKN 146

  Fly   583 GIDLNRNFPDQYGTDRFNKVTEPEVAAVMNWTLSLPFVLSANLHGGSLVANYPFDDNENDFNDPF 647
            |:||||||||.:......| .|.||.|||.|..|..||||||||||:|||:||:|::..      
Zfish   147 GVDLNRNFPDAFEEGNEQK-RESEVRAVMEWLKSETFVLSANLHGGALVASYPYDNSNG------ 204

  Fly   648 MRLRNSSING-RKPNPTEDNALFKHLAGIYSNAHPTMYLGQPCELFQNEFFPDGITNGAQWYSVT 711
                .|...| |..:|.:|  :|.|||..||..|..:|.|..|...|:  |..|||||.|||.:.
Zfish   205 ----GSEQQGYRSVSPDDD--VFVHLAKTYSYNHTEVYRGNHCSDLQS--FSSGITNGYQWYPLQ 261

  Fly   712 GGMQDWNYVRAGCLELTIEMGCDKFPKAAELSRYWEDHREPLLQFIEQVHCGIHGFVHSTIGTPI 776
            |||||:|||.|.|||||:|:.|.|||...:|...||.:|..||.:::|||.|:.|.|..:.|..|
Zfish   262 GGMQDYNYVWAQCLELTLEISCCKFPPEEQLPALWEANRAALLAYMQQVHLGLKGVVMDSSGQII 326

  Fly   777 AGAVVRLDGANH--STYSQVFGDYWKLALPGRHNLTVLGDNYAPLRMEVEVP 826
            ..|||.:.|.|:  :..|.|.|:|::|.|||::.|.|:...:..:...||||
Zfish   327 PHAVVEVLGRNNLCAFQSDVNGEYFRLLLPGKYMLKVMAPGFKTVIQNVEVP 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svrNP_996319.1 M14_CPD_I 40..334 CDD:349440
Peptidase_M14NE-CP-C_like 338..416 CDD:200604
M14_CP_N-E_like 456..759 CDD:349431 148/303 (49%)
Peptidase_M14NE-CP-C_like 763..839 CDD:200604 24/66 (36%)
Peptidase_M14NE-CP-C_like 1124..1190 CDD:473874
CarboxypepD_reg 1223..1301 CDD:433354
cpmNP_001017591.1 M14_CPM 21..309 CDD:349438 148/303 (49%)
Peptidase_M14NE-CP-C_like 313..393 CDD:200604 24/66 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.