DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3156 and ABCB12

DIOPT Version :10

Sequence 1:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_171754.1 Gene:ABCB12 / 839282 AraportID:AT1G02530 Length:1273 Species:Arabidopsis thaliana


Alignment Length:638 Identity:201/638 - (31%)
Similarity:335/638 - (52%) Gaps:46/638 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FAQSSKWLARNAKANLPTAVGAGIVPAPVKMGRSQYG-------------RLLSLTKSEKWVLTA 125
            |..||:..:.|.   |....|..:.....::|:.:.|             |:.:|.|.|..||..
plant   646 FGNSSRHHSLNV---LGLFAGLDLGSGSQRVGQEETGTTSQEPLRKVSLTRIAALNKPEIPVLLL 707

  Fly   126 GIGCLVVSSAITMSVPLF---LGKVIDVVFNKSGM---DSAAMAKLGEYSVLLFGIFVLGGFANF 184
            |.....::.||   .|||   :.:||:..|..:..   ||..      ::::...:.|.....:.
plant   708 GTVVAAINGAI---FPLFGILISRVIEAFFKPADQLKKDSRF------WAIIFVALGVTSLIVSP 763

  Fly   185 ARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFD--TKGTGELINRLSNDTLMVGTSLSQNVSDG 247
            ::::||..|..:::|.::|..:...:..||.|||  ...:|.:..|||.|..::...:...:|..
plant   764 SQMYLFAVAGGKLIRRIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLA 828

  Fly   248 LRSVAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVELDKYAEIMKFAEERF 312
            :::.|....|..:....|.:||.:..:::|.:.....:..::::..:.....||.|..:.|.:..
plant   829 VQNAASAASGLIIAFTASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAV 893

  Fly   313 GNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARAIFFGLTGFCGNFIIISVLYYGGTLVLQ 377
            |:::||.:||.|::.:..::.:.:..::.|.|:.....:.||.:.|. .|.:.:..:|....:::
plant   894 GSIRTVASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFI-LFCVYATSFYAAARLVE 957

  Fly   378 DSLTIGALTAFMLYAGYVAISMNGL-----SNFYSQLNKGIGASERIWEILDRECSIPI--DKGV 435
            |    |..|...::..:.|::|..:     |.|....:|...|:..|:.|:||:..|..  :.|.
plant   958 D----GKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGT 1018

  Fly   436 VPLEKPVGEVGFQNVFFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQ 500
            | ||...|::..:::.||:|.||...:..|..|.:..|.|.|:||.|||||:|:..|:.|.|||.
plant  1019 V-LENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPD 1082

  Fly   501 GGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILYGANPGETPSPERLQQVIEDANV 565
            .|.:.|||::|:.:..:|||..:|.|.||||||:.:||.||.||....|..:...:....|.||.
plant  1083 SGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANA 1147

  Fly   566 SQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARALIKNPAILILDEATSALDAVSENLVQNALD 630
            .:|...:..|.||:||::|:.||||||||||||||::|.|.||:||||||||||.||.|||:|||
plant  1148 HKFISSIQQGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERLVQDALD 1212

  Fly   631 NLIQGRTVLTIAHRLSTIRNADQIAVLSDGKIVEQGSYNELMGIQEGVFRELV 683
            .:|..||.:.:|||||||:|||.||::.:|.|.|.|::..|:.|..||:..||
plant  1213 RVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKIDGGVYASLV 1265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3156NP_569844.2 MdlB 103..687 CDD:440747 195/609 (32%)
ABCB12NP_171754.1 PTZ00265 3..1267 CDD:240339 201/638 (32%)
MdlB 690..1272 CDD:440747 193/591 (33%)

Return to query results.
Submit another query.