DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3156 and Abcb4

DIOPT Version :9

Sequence 1:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_032856.2 Gene:Abcb4 / 18670 MGIID:97569 Length:1276 Species:Mus musculus


Alignment Length:617 Identity:221/617 - (35%)
Similarity:329/617 - (53%) Gaps:63/617 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 AVGAGIVPAPVKMGRSQYGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDVVFNKSG 156
            |.|:|:   |:.|  ..:|.:     ::|:|...|...|.|:.:::|..|   |::::       
Mouse    63 AHGSGL---PLMM--IVFGEM-----TDKFVDNTGNFSLPVNFSLSMLNP---GRILE------- 107

  Fly   157 MDSAAMAKLGEYSVLLFGIFVLGG---FANFARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFD 218
                  .::..|:....|   |||   .|.:.:|..:..||.|.::.:|.:.:.::|.||:||||
Mouse   108 ------EEMTRYAYYYSG---LGGGVLVAAYIQVSFWTLAAGRQIKKIRQKFFHAILRQEMGWFD 163

  Fly   219 TKGTGELINRLSNDTLMVGTSLSQNVSDGLRSVAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMA 283
            .|||.||..||::|...:...:...|....:::|....|..:......:|..|...:.|.:....
Mouse   164 IKGTTELNTRLTDDVSKISEGIGDKVGMFFQAIATFFAGFIVGFIRGWKLTLVIMAISPILGLST 228

  Fly   284 IVYGRYVRRITKVELDKYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRA 348
            .|:.:.:...:..||..||:....|||..|.::||..|..:.:|:..:...|:.|.:||.|:..:
Mouse   229 AVWAKILSTFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHLENAKKIGIKKAIS 293

  Fly   349 RAIFFGLTGFCGNFIIISVLY-----YGGTLVLQDSLTIG-ALTAFM------LYAGYVAISMNG 401
            ..|..|:.     |::|...|     ||.|||:....||| |:|.|.      ...|..|..::.
Mouse   294 ANISMGIA-----FLLIYASYALAFWYGSTLVISKEYTIGNAMTVFFSILIGAFSVGQAAPCIDA 353

  Fly   402 LSNFYSQLNKGIGASERIWEILDRECSIP--IDKGVVPLEKPVGEVGFQNVFFTFPTRPESAVLT 464
            .:|       ..||:..|::|:|....|.  .::|..| :...|.:.|.:|.|::|:|....:|.
Mouse   354 FAN-------ARGAAYVIFDIIDNNPKIDSFSERGHKP-DNIKGNLEFSDVHFSYPSRANIKILK 410

  Fly   465 DFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQGGTVHLDGIDLRTVNPQWLRNNIGAVSQE 529
            ..:|.:..|.|.|:||.||.||:|...|:.|||||..|.:.:||.|:|..|.:.||..||.||||
Mouse   411 GLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQE 475

  Fly   530 PVLFSCSIRENILYGANPGETPSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQR 594
            |||||.:|.|||.||..   ..:.:.:::.:::||...|..:||...|||||.||..||||||||
Mouse   476 PVLFSTTIAENIRYGRG---NVTMDEIEKAVKEANAYDFIMKLPQKFDTLVGDRGAQLSGGQKQR 537

  Fly   595 VAIARALIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRNADQIAVLSD 659
            :||||||::||.||:|||||||||..||..||.|||...:|||.:.||||||||||||.||...|
Mouse   538 IAIARALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTIRNADVIAGFED 602

  Fly   660 GKIVEQGSYNELMGIQEGVFRELVASQAFGSR 691
            |.||||||::|||. :||::..||..|..||:
Mouse   603 GVIVEQGSHSELMK-KEGIYFRLVNMQTAGSQ 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3156NP_569844.2 MdlB 106..687 CDD:224055 213/597 (36%)
ABC_membrane 127..395 CDD:279056 72/282 (26%)
ABC_MTABC3_MDL1_MDL2 447..686 CDD:213216 126/238 (53%)
Abcb4NP_032856.2 PTZ00265 30..1269 CDD:240339 221/617 (36%)
ABC_membrane 58..342 CDD:279056 80/312 (26%)
ABC_MTABC3_MDL1_MDL2 392..628 CDD:213216 126/239 (53%)
Interaction with HAX1. /evidence=ECO:0000250 622..646 5/12 (42%)
ABC_membrane 712..982 CDD:279056
ABC_MTABC3_MDL1_MDL2 1031..1270 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.