DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3156 and pgp-12

DIOPT Version :10

Sequence 1:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_510126.1 Gene:pgp-12 / 181415 WormBaseID:WBGene00004006 Length:1318 Species:Caenorhabditis elegans


Alignment Length:608 Identity:205/608 - (33%)
Similarity:317/608 - (52%) Gaps:74/608 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 YGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDVVFNKSGMD--SAAMAKLGEYSVL 171
            :|..||....   :...|:|  :::..||.|:         ::.|.:..|  .:||.     :|.
 Worm    95 FGIFLSFISG---IAQPGLG--IIAGNITNSL---------LIHNATSDDFYDSAMT-----NVW 140

  Fly   172 LF---GIFVLGGFANFARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFDTKGTGELINRLSNDT 233
            ||   ||.||  ..||.:...|....:||...::....:|:|.|..||||...:|.|..:|.::.
 Worm   141 LFGGIGIIVL--IVNFVQYMCFQYCCIRITSKMKQHYIQSILRQNAGWFDKNHSGTLTTKLHDNM 203

  Fly   234 LMVGTSLSQNVSDGLRSVAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVEL 298
            ..:...:...:...:|.:.|...|..:..:...:||.:...:.|.......:..|.:...|..||
 Worm   204 ERINEGIGDKLGVLIRGMVMFVAGIVISFFYEWRLALMMMGIGPLCCVCMSLMSRSMSSFTSKEL 268

  Fly   299 DKYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARAIFFGLTG--FCGN 361
            ....:....|||....|:||:.|..:::.|..:..:|.:.        ::.||..||.|  |.|.
 Worm   269 AGVGKAGSIAEESLMGVRTVQAFNGQEEMVEKYTVELGKG--------KSFAIQKGLWGGVFGGI 325

  Fly   362 FIII------SVLYYGGTL-------------VLQDSLTIGALTAFMLYAGYVAISMNGLSNFYS 407
            |::.      ..:||||.|             ::..|:.|||     .:.|.::..:..|     
 Worm   326 FLLFLFSYFGGGIYYGGQLLRWKIIETPGDVFIVVISMLIGA-----YFLGLISPHLMVL----- 380

  Fly   408 QLNKGIGASERIWEILDRECSIPI--DKGVVPLEKPVGEVGFQNVFFTFPTRPESAVLTDFSLNL 470
             ||..:.|: .|:||:||...|.:  .:| ..:...||:|.|:.|.|.:|||.:..||...:|.:
 Worm   381 -LNARVAAA-TIYEIIDRTPDIDVYSTEG-QKMTNVVGKVVFEEVHFRYPTRKKVKVLNGLNLTV 442

  Fly   471 MPGTTTAVVGRSGSGKTTIALLMLRLYDPQGGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSC 535
            .|||:.|:||.||.||:|...|:.|||:|:||.|.:||.|:|::|..|||..:|.|.|||:||:.
 Worm   443 KPGTSVALVGHSGCGKSTSVGLLTRLYEPEGGKVMIDGQDVRSLNIDWLRKTVGIVQQEPILFND 507

  Fly   536 SIRENILYGANPGETPSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARA 600
            :|..|:|.| ||..|  .|.:.:|.:.||...|..::|:|.:|::|...:.|||||||||||||.
 Worm   508 TIHNNLLIG-NPSAT--REDMIRVCKMANAHDFIQKMPNGYETMIGDGSVQLSGGQKQRVAIART 569

  Fly   601 LIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRNADQIAVLSDGKIVEQ 665
            ||::|.:|:||||||||||.||::||:||:|..:|||.:.|||||||||.||:|....:|.|||.
 Worm   570 LIRDPKVLLLDEATSALDAQSESVVQSALNNAAKGRTTIMIAHRLSTIREADKIVFFENGVIVES 634

  Fly   666 GSYNELMGIQEGVFRELVASQAF 688
            |::.||:.: .|.:.:||.:|.|
 Worm   635 GNHEELVAL-GGRYAKLVEAQKF 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3156NP_569844.2 MdlB 103..687 CDD:440747 203/605 (34%)
pgp-12NP_510126.1 MdlB 77..654 CDD:440747 203/604 (34%)
PTZ00265 145..1312 CDD:240339 190/539 (35%)

Return to query results.
Submit another query.