DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3156 and pgp-5

DIOPT Version :9

Sequence 1:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_001257116.1 Gene:pgp-5 / 181276 WormBaseID:WBGene00003999 Length:1252 Species:Caenorhabditis elegans


Alignment Length:615 Identity:205/615 - (33%)
Similarity:310/615 - (50%) Gaps:77/615 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 TKSEKWVLTAGIGCLVVSSAIT-MSVPL----------FLGKVIDVVFNKS--GMDSAAMAKLGE 167
            |:.||.:...|    ||.|.:| |..|.          .|.||.:.:.||:  .:|.|...||.|
 Worm    30 TRYEKLLFFLG----VVFSILTGMCQPFESYTLGETSQVLVKVTNAINNKTIDPVDLAHAYKLFE 90

  Fly   168 YS----VLLFGIFVLG------GFANFARVHLFG-NAALRIVRSLRSRLYRSMLMQEVGWFDTKG 221
            ..    ||||  |::|      ||..|:.:...| |.|..:.|...|||.|    :::.:||...
 Worm    91 SDMNRVVLLF--FLVGFAYFTFGFLQFSIMKFVGDNTAYNVRRQYISRLLR----KDISYFDGMS 149

  Fly   222 TGELINRLSNDTLMVGTSLSQNVSDGLRSVAMIGVGTGMMIYTSPQLAAVSAL----VVPAMAGM 282
            ||.|...|:::........::.::..:..:....:||.:..||..:||....:    :|  ::|:
 Worm   150 TGHLSIVLNDNMERFREVFNEKIALIIALLTDFVIGTILAFYTDWRLACYGTVFSFGIV--LSGL 212

  Fly   283 AIVYGRYVRRITKVELDKYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETR 347
            ...:|:  .:..:.:.:..:.....|.:..|..|||.:...:||||..:    .|.|:.|.|...
 Worm   213 LDSWGK--MKNNEKQNEHISNAGSIAFQALGCYKTVSSLNGQQQEVERY----TEELKNGEKYAL 271

  Fly   348 ARAIFFGLTG----FCGNFIIISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMNGLSNFYSQ 408
            .||..|.|:.    |..|.:...:||:|..::.:.::..|.:...:.|..:.:..:.......|:
 Worm   272 NRAFVFSLSRSADYFFTNALNFVILYFGANMIYEGTIEPGVVVRILYYILFGSYCLGEAILHISR 336

  Fly   409 LNKGIGASERIWEILDRECSIPIDKGVVPLE------KPV--GEVGFQNVFFTFPTRPESAVLTD 465
            |...|..:..|.:||       :|......|      |..  |.:.|:||.|::||||:..||.:
 Worm   337 LASAIPLTVPIADIL-------LDSDATADEFFSEEIKDTFQGIISFKNVLFSYPTRPDVPVLKE 394

  Fly   466 FSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQGGTVHLDGIDLRTVNPQWLRNNIGAVSQEP 530
            .|.|:..|...|:||.|||||:|:..|:|..|:...|.:.:||.|:..:|.:.||..:|.|.|||
 Worm   395 ISFNVQGGECIALVGASGSGKSTVIQLLLHYYNIDSGRISIDGNDIYNINIKQLRQAMGVVFQEP 459

  Fly   531 VLFSCSIRENILYGANPGETPSPERLQQVIED----ANVSQFTDQLPDGLDTLVGQRGMMLSGGQ 591
            |||:.||.|||.:|       .|:..:|.|.|    ||...|....|||:.|:||:||..|||||
 Worm   460 VLFNTSIEENIRFG-------KPDATEQEIIDALKNANAFDFVCNFPDGIKTIVGERGAQLSGGQ 517

  Fly   592 KQRVAIARALIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRNADQIAV 656
            |||:||||.|::||.||:|||||||||..||.:||.||.....|||.:.:||||||||||::|.|
 Worm   518 KQRIAIARTLVRNPRILLLDEATSALDNESEFIVQEALQKASIGRTTIVVAHRLSTIRNANKIIV 582

  Fly   657 LSDGKIVEQGSYNELMGIQEGVFRELVASQ 686
            :..|:|||.|.:.:|:.: .||:..||.:|
 Worm   583 MEKGEIVEVGDHKQLIAM-NGVYNNLVQTQ 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3156NP_569844.2 MdlB 106..687 CDD:224055 205/615 (33%)
ABC_membrane 127..395 CDD:279056 72/299 (24%)
ABC_MTABC3_MDL1_MDL2 447..686 CDD:213216 118/242 (49%)
pgp-5NP_001257116.1 PTZ00265 27..1241 CDD:240339 205/615 (33%)
ABC_membrane 41..322 CDD:294371 72/294 (24%)
ABC_MTABC3_MDL1_MDL2 374..611 CDD:213216 118/244 (48%)
ABC_membrane 688..955 CDD:294371
ABC_MTABC3_MDL1_MDL2 1005..1243 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - O PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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