DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3156 and abcb4

DIOPT Version :9

Sequence 1:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_001303643.1 Gene:abcb4 / 100136865 ZFINID:ZDB-GENE-080204-52 Length:1275 Species:Danio rerio


Alignment Length:587 Identity:209/587 - (35%)
Similarity:316/587 - (53%) Gaps:34/587 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 LVVSSAITMSVPLFL---GKVIDVVFNKSGMDS--------------AAMAKLGE--------YS 169
            |::|.|....:||.:   |.:.|...:.:.:|:              .:...|||        ||
Zfish    60 LIMSMANGAVLPLMVIVFGDMTDSFVDDTLLDNLKNITLPPNFTFPETSNITLGEKMTTHAIYYS 124

  Fly   170 VLLFGIFVLGGFANFARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFDTKGTGELINRLSNDTL 234
            ::.|.:.|    |.:.:|..:..||.|.|:.||...:.|::.||:||||...||:|..||::|..
Zfish   125 IMGFVVLV----AAYMQVAFWTLAAGRQVKKLRKIFFHSIMKQEIGWFDVNETGQLNTRLTDDVY 185

  Fly   235 MVGTSLSQNVSDGLRSVAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVELD 299
            .:...:...:...::::....||..:......:|..|...|.|.:...|.|.|:.:...|..|..
Zfish   186 KINEGIGDKLGMLIQNLTTFIVGIIIGFAKGWKLTLVILAVSPLLGISAAVIGKVMTTFTSKEQT 250

  Fly   300 KYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARAIFFGLTGFCGNFII 364
            .||:....|||...:::||..|..:::|:..:...|::|..:|.::.....|..|.|.|......
Zfish   251 AYAKAGAVAEEVLSSIRTVFAFGGQKKEIKRYHKNLEDAKNVGVRKAITVNIAMGFTFFMIYMSY 315

  Fly   365 ISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMNGLSNFYSQLNKGIGASERIWEILDRECSI 429
            ....:||.||:|....|||.|..........|..:...|......:...||:.::::|:|.|..|
Zfish   316 ALAFWYGSTLILGGEYTIGMLLTIFFAVLIGAFGLGQTSPNIQTFSSARGAAHKVFQIIDHEPKI 380

  Fly   430 -PIDKGVVPLEKPVGEVGFQNVFFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSGKTTIALLM 493
             ...:....|:...|.:.|:|:.|.:|:|.:..||...:|.:|.|.|.|:||.||.||:|...|:
Zfish   381 NSFSEEGYKLDVVKGNIEFKNIHFRYPSRDDVKVLNGMNLKVMSGQTIALVGSSGCGKSTTIQLL 445

  Fly   494 LRLYDPQGGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILYGANPGETPSPERLQQ 558
            .|.||||.|:|.:||.|:|::|.:.||..||.||||||||:.:|.|||.||.   :..:.:.::|
Zfish   446 QRFYDPQEGSVSIDGHDIRSLNVRGLRELIGVVSQEPVLFATTIAENIRYGR---QDVTQDEIEQ 507

  Fly   559 VIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARALIKNPAILILDEATSALDAVSEN 623
            ...:||...|..:|||..:||||.||..:|||||||:||||||::||.||:||||||||||.||.
Zfish   508 AAREANAYNFIMKLPDKFETLVGDRGTQMSGGQKQRIAIARALVRNPKILLLDEATSALDAESET 572

  Fly   624 LVQNALDNLIQGRTVLTIAHRLSTIRNADQIAVLSDGKIVEQGSYNELMGIQEGVFRELVASQAF 688
            :||.|||.:..|||.:.:|||||||||||.||...:|:|||.|:::|||. ::|::..||..|.|
Zfish   573 IVQAALDKVRLGRTTIVVAHRLSTIRNADVIAGFQNGEIVELGTHDELME-RKGIYHSLVNMQMF 636

  Fly   689 GS 690
            .|
Zfish   637 KS 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3156NP_569844.2 MdlB 106..687 CDD:224055 206/582 (35%)
ABC_membrane 127..395 CDD:279056 72/289 (25%)
ABC_MTABC3_MDL1_MDL2 447..686 CDD:213216 124/238 (52%)
abcb4NP_001303643.1 PTZ00265 55..1266 CDD:240339 209/587 (36%)
ABC_membrane 60..348 CDD:279056 72/291 (25%)
ABC_MTABC3_MDL1_MDL2 397..634 CDD:213216 124/240 (52%)
ABC_membrane 714..984 CDD:279056
ABC_MTABC3_MDL1_MDL2 1035..1272 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.