DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and ctsd

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_571785.2 Gene:ctsd / 65225 ZFINID:ZDB-GENE-010131-8 Length:398 Species:Danio rerio


Alignment Length:399 Identity:160/399 - (40%)
Similarity:218/399 - (54%) Gaps:30/399 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LVFLAGLIVLVGEANSTLRRIPIQKSPNFK-------RSHKNIVAERDFVQQKYNRQYTANGYPM 66
            :.||. |:|.....:..:.|||::|....:       ||.:.:|:..:.:  |||..:.|:..|.
Zfish     3 IAFLL-LVVAFFCTSDAIVRIPLKKFRTLRRTLSDSGRSLEELVSSSNSL--KYNLGFPASNDPT 64

  Fly    67 -EHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCIST--ACQDHQVFYKNKSSTYV 128
             |.|.||.:.||||.|.:|||.|.|.|.|||||||||||...|..|  ||..|..:...||||||
Zfish    65 PETLKNYLDAQYYGEIGLGTPVQTFTVVFDTGSSNLWVPSVHCSLTDIACLLHHKYNGGKSSTYV 129

  Fly   129 ANGTAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAV 193
            .|||.|:|.||:||:|||||.|......:.::.|.|||...:.|..|:.|.|||||||.:|.:||
Zfish   130 KNGTQFAIQYGSGSLSGYLSQDTCTIGDIAVEKQIFGEAIKQPGVAFIAAKFDGILGMAYPRIAV 194

  Fly   194 DGVTPTFQNMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKF 258
            |||.|.|..||.|..|:..||||:|..|.. |..||||:|||:||..|:|...||::.:.|||:.
Zfish   195 DGVPPVFDMMMSQKKVEKNVFSFYLNRNPD-TQPGGELLLGGTDPKYYTGDFNYVDISRQAYWQI 258

  Fly   259 QTDYIKVGS--TSISTFAQAIADTGTSLIIAPQAQYDQISQLFNA----NSEGLFECSST-SYPD 316
            ..|.:.:||  :......:||.|||||||..|.|:...:.:...|    ..|.:.:|... :.|.
Zfish   259 HMDGMSIGSGLSLCKGGCEAIVDTGTSLITGPAAEVKALQKAIGAIPLMQGEYMVDCKKVPTLPT 323

  Fly   317 LIININGVDFKIPAKYYIIEE----EDFC-----SLAIQSINQDFWIMGDVFLGRIYTEFDVGNQ 372
            :..::.|..:.:..:.||::|    .|.|     .|.|.......||:||||:|:.||.||..|.
Zfish   324 ISFSLGGKVYSLTGEQYILKESQGGHDICLSGFMGLDIPPPAGPLWILGDVFIGQYYTVFDRENN 388

  Fly   373 RLGFAPVNS 381
            |:|||...|
Zfish   389 RVGFAKAKS 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 142/328 (43%)
Asp 76..379 CDD:278455 139/320 (43%)
ctsdNP_571785.2 A1_Propeptide 19..44 CDD:285240 6/24 (25%)
Cathepsin_D2 70..394 CDD:133157 140/324 (43%)
Asp 75..395 CDD:278455 139/320 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.890

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