DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and Pga5

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_068521.1 Gene:Pga5 / 60372 RGDID:621573 Length:387 Species:Rattus norvegicus


Alignment Length:392 Identity:140/392 - (35%)
Similarity:208/392 - (53%) Gaps:35/392 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VFLAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAERDFVQQKYNR--------QYTANGYPM 66
            :::.||:.|    :..|.:||:.|..:.:.:.:.....:|:: :||.|        |........
  Rat     4 LWVLGLVAL----SECLVKIPLMKIKSMRENLRESHMLKDYL-EKYPRSRAHVLLEQRRNPSVTY 63

  Fly    67 EHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVANG 131
            |.:.||.:..|.|.||||||.|:|.|..|||||:||||...|.|.||..|:||...:|||::.:|
  Rat    64 EPMRNYLDLVYIGTISIGTPPQEFKVVLDTGSSDLWVPSIYCSSPACAHHKVFNPLQSSTFLVSG 128

  Fly   132 TAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDGV 196
            ...::.||:|.:||:|:.|.|....||:.:|.||....|.|.....|.||||||:|:|:|.:.||
  Rat   129 RPVNVAYGSGEMSGFLAYDTVKIGDLTVVAQAFGLSLEEPGRFMEHAVFDGILGLGYPNLGLQGV 193

  Fly   197 TPTFQNMMQQGLVQSPVFSFFLR---DNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKF 258
            ||.|.|:..|||:...:|:|:|.   :.|||      |:|||.|||.|.|.|.:|.|.:.:||:.
  Rat   194 TPVFDNLWIQGLIPQNLFAFYLSSKDEKGSV------LMLGGVDPSYYHGELHWVPVSKPSYWQL 252

  Fly   259 QTDYIKVGSTSIST--FAQAIADTGTSLIIAPQAQYDQISQLFNANSEG----LFECSS-TSYPD 316
            ..|.|.:....|:.  ..|.|.||||||:..|::....|..|..|.:.|    ..:|.: .:.||
  Rat   253 AVDSISMNGEIIACDGGCQGIMDTGTSLVTGPRSSILNIQNLIGAKASGDGEYFLKCDTINTLPD 317

  Fly   317 LIININGVDFKIPAKYYIIEEEDF-CSLAIQSINQD-----FWIMGDVFLGRIYTEFDVGNQRLG 375
            ::..|:.|.:.:||..||.::... |....:....|     .|::|||||...:|.||..|.|:|
  Rat   318 IVFTIDSVTYPVPASAYIRKDHSHNCRSNFEESTDDPSDPELWVLGDVFLRLYFTVFDRANNRIG 382

  Fly   376 FA 377
            .|
  Rat   383 LA 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 128/327 (39%)
Asp 76..379 CDD:278455 125/318 (39%)
Pga5NP_068521.1 A1_Propeptide 16..44 CDD:285240 5/28 (18%)
pepsin_retropepsin_like 64..385 CDD:299705 128/327 (39%)
Asp 74..386 CDD:278455 125/317 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1456
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.030

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