DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and pgc-like.1

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001025603.1 Gene:pgc-like.1 / 594991 XenbaseID:XB-GENE-964422 Length:385 Species:Xenopus tropicalis


Alignment Length:391 Identity:151/391 - (38%)
Similarity:214/391 - (54%) Gaps:35/391 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VFLAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAERDF---------VQQKYNRQYTANGYP 65
            |.||.:.:.:.|.   |.|:|:.||...:.:.|.....::|         ::.|||.:   |.:.
 Frog     4 VILAFVCLQISEG---LIRVPLHKSKTIRETMKEKGVLKEFMKTHKREPAMKYKYNLK---NDFA 62

  Fly    66 MEHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVAN 130
            :.:...|.:..|||.||:|||.|:|:|.||||||||||..:.|.|.|||:|.:|..::||||.:.
 Frog    63 IAYEPMYMDAAYYGQISVGTPPQNFMVLFDTGSSNLWVASTYCQSGACQNHPLFNPSQSSTYTSK 127

  Fly   131 GTAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDG 195
            ...||||||:||::|....|.|...||:|.:|..|....|.|||||.:.|:||.||.:|:||..|
 Frog   128 NQQFSITYGSGSLTGVFGYDTVTVQGLSITNQEIGLSINEPGTNFVYSSFEGIFGMAYPALAAGG 192

  Fly   196 VTPTFQNMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKFQT 260
            .|...|.|:||.|:..|:||.::...      .||:|.||.|.|||||.:.:..|.|..||:...
 Frog   193 ATTPMQGMLQQNLLTYPIFSVYMSSQ------SGEVIFGGVDSSLYSGQIYWAPVTQELYWQIAI 251

  Fly   261 DYIKVGSTS---ISTFAQAIADTGTSLIIAPQAQYDQISQLFNAN----SEGLFECSST-SYPDL 317
            |...:...:   .|...||:.||||||:..||.......|...|.    .|.:..|::. |.|.:
 Frog   252 DEFSINGQATGWCSQGCQAMVDTGTSLLTVPQQFMGTFLQSLGAQQNQYGEYIVNCNNVQSLPPI 316

  Fly   318 IININGVDFKIPAKYYIIEEEDFCSLAIQ-----SIN-QDFWIMGDVFLGRIYTEFDVGNQRLGF 376
            ...||||.|.||...||::...:||:.::     |.| |.|||:|||||.:.|:.:|:||.|:||
 Frog   317 SFTINGVQFPIPPSAYILQNNGYCSVGVEVTYLPSQNGQPFWILGDVFLRQYYSVYDMGNNRVGF 381

  Fly   377 A 377
            |
 Frog   382 A 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 136/325 (42%)
Asp 76..379 CDD:278455 135/316 (43%)
pgc-like.1NP_001025603.1 A1_Propeptide 17..45 CDD:369623 7/27 (26%)
pepsin_retropepsin_like 71..382 CDD:386101 133/316 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1456
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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