DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgcl and pgc.2

DIOPT Version :10

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001025603.1 Gene:pgc.2 / 594991 XenbaseID:XB-GENE-964422 Length:385 Species:Xenopus tropicalis


Alignment Length:391 Identity:151/391 - (38%)
Similarity:214/391 - (54%) Gaps:35/391 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VFLAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAERDF---------VQQKYNRQYTANGYP 65
            |.||.:.:.:.|.   |.|:|:.||...:.:.|.....::|         ::.|||.:   |.:.
 Frog     4 VILAFVCLQISEG---LIRVPLHKSKTIRETMKEKGVLKEFMKTHKREPAMKYKYNLK---NDFA 62

  Fly    66 MEHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVAN 130
            :.:...|.:..|||.||:|||.|:|:|.||||||||||..:.|.|.|||:|.:|..::||||.:.
 Frog    63 IAYEPMYMDAAYYGQISVGTPPQNFMVLFDTGSSNLWVASTYCQSGACQNHPLFNPSQSSTYTSK 127

  Fly   131 GTAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDG 195
            ...||||||:||::|....|.|...||:|.:|..|....|.|||||.:.|:||.||.:|:||..|
 Frog   128 NQQFSITYGSGSLTGVFGYDTVTVQGLSITNQEIGLSINEPGTNFVYSSFEGIFGMAYPALAAGG 192

  Fly   196 VTPTFQNMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKFQT 260
            .|...|.|:||.|:..|:||.::...      .||:|.||.|.|||||.:.:..|.|..||:...
 Frog   193 ATTPMQGMLQQNLLTYPIFSVYMSSQ------SGEVIFGGVDSSLYSGQIYWAPVTQELYWQIAI 251

  Fly   261 DYIKVGSTS---ISTFAQAIADTGTSLIIAPQAQYDQISQLFNAN----SEGLFECSST-SYPDL 317
            |...:...:   .|...||:.||||||:..||.......|...|.    .|.:..|::. |.|.:
 Frog   252 DEFSINGQATGWCSQGCQAMVDTGTSLLTVPQQFMGTFLQSLGAQQNQYGEYIVNCNNVQSLPPI 316

  Fly   318 IININGVDFKIPAKYYIIEEEDFCSLAIQ-----SIN-QDFWIMGDVFLGRIYTEFDVGNQRLGF 376
            ...||||.|.||...||::...:||:.::     |.| |.|||:|||||.:.|:.:|:||.|:||
 Frog   317 SFTINGVQFPIPPSAYILQNNGYCSVGVEVTYLPSQNGQPFWILGDVFLRQYYSVYDMGNNRVGF 381

  Fly   377 A 377
            |
 Frog   382 A 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 Asp 76..379 CDD:394983 135/316 (43%)
pgc.2NP_001025603.1 A1_Propeptide 19..45 CDD:462326 6/25 (24%)
pepsin_retropepsin_like 71..382 CDD:472175 133/316 (42%)

Return to query results.
Submit another query.