DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and Cym

DIOPT Version :10

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_064476.2 Gene:Cym / 56825 RGDID:708486 Length:379 Species:Rattus norvegicus


Alignment Length:388 Identity:130/388 - (33%)
Similarity:192/388 - (49%) Gaps:36/388 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FLAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAERDFV---QQKYNRQYTANG-YPMEHLSN 71
            |:..|.||....:..:.|||:.|..:.:.:.|......||:   |.:::.:.:..| ...|.|:|
  Rat     4 FVLLLAVLAIAQSHVVTRIPLHKGKSLRNTLKEQGLLEDFLRRHQYEFSEKNSNIGVVASEPLTN 68

  Fly    72 YDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVANGTAFSI 136
            |.:.:|:|.|.:|||.|:|.|.||||||.||||...|.|..|::|..|..:||.|:........:
  Rat    69 YLDSEYFGLIYVGTPPQEFKVVFDTGSSELWVPSVYCSSKVCRNHNRFDPSKSFTFQNLSKPLFV 133

  Fly   137 TYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDGVTPTFQ 201
            .||||||.|:|:.|.|..:.:.:..||.|..|.|.|..|..:.||||||:.:|:.|.....|.|.
  Rat   134 QYGTGSVEGFLAYDTVTVSDIVVPHQTVGLSTEEPGDIFTYSPFDGILGLAYPTFASKYSVPIFD 198

  Fly   202 NMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKFQTDYIKVG 266
            |||.:.||...:||.::..|..    |..|.||..|.|.:.|||.:|.|....||:|..|.|.:.
  Rat   199 NMMNRHLVAQDLFSVYMSRNDQ----GSMLTLGAIDQSYFIGSLHWVPVTVQGYWQFTVDRITIN 259

  Fly   267 STSIST--FAQAIADTGTSLIIAP--------------QAQYDQISQLFNANSEGLFECSSTSY- 314
            ...::.  ...|:.||||:|:..|              |.|:||..          .:|...:: 
  Rat   260 DEVVACQGGCPAVLDTGTALLTGPGRDILNIQHAIGAVQGQHDQFD----------IDCWRLNFM 314

  Fly   315 PDLIININGVDFKIPAKYYIIEEEDFCSLAIQSINQDFWIMGDVFLGRIYTEFDVGNQRLGFA 377
            |.::..|||.:|.:|...|..:.:..||...:..:| .||:||||:...|:.||..|.|:|.|
  Rat   315 PTVVFEINGREFPLPPSAYTNQFQGSCSSGFRHGSQ-MWILGDVFIREFYSVFDRANNRVGLA 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 Asp 76..379 CDD:394983 113/319 (35%)
CymNP_064476.2 A1_Propeptide 21..47 CDD:462326 7/25 (28%)
pepsin_retropepsin_like 64..377 CDD:472175 117/328 (36%)

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