DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and napsa

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_956325.1 Gene:napsa / 336746 ZFINID:ZDB-GENE-030131-8690 Length:412 Species:Danio rerio


Alignment Length:408 Identity:157/408 - (38%)
Similarity:218/408 - (53%) Gaps:46/408 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FLAGLIVLVGEANSTLRRIPIQKSPNFKR----SHKNIVAERDFVQQK---YNRQYTANGY---- 64
            ||.||::...:|   :.|||:.|....:|    :.|.|...:...:.|   .:..:|..|.    
Zfish     9 FLIGLLIADSQA---IIRIPLHKMRTVRRMLADNGKTIDEIKSLAKMKAKYSDGTFTNQGSVTIP 70

  Fly    65 ---------PMEHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSC--ISTACQDHQV 118
                     |:|.|:|:.:.||||.||||||.|||.|.|||||||||||...|  :..||..|:.
Zfish    71 APTTTQLPPPVEKLTNFMDAQYYGMISIGTPPQDFSVLFDTGSSNLWVPSIHCAFLDIACWLHRR 135

  Fly   119 FYKNKSSTYVANGTAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGI 183
            :...||||||.|||.|||.||.||:||::|.|.|..|||.:..|.|.|...:.|..|..|.|||:
Zfish   136 YNSKKSSTYVQNGTEFSIQYGRGSLSGFISQDTVNLAGLNVTGQQFAEAVKQPGIVFAVARFDGV 200

  Fly   184 LGMGFPSLAVDGVTPTFQNMMQQGLVQSPVFSFFL-RD-NGSVTFYGGELILGGSDPSLYSGSLT 246
            |||.:|:::||.|||.|...|...::...:|||:: || .|.|   ||||:|||.|...::|.|.
Zfish   201 LGMAYPAISVDRVTPVFDTAMAAKILPQNIFSFYINRDPAGDV---GGELMLGGFDQQYFNGDLH 262

  Fly   247 YVNVVQAAYWKFQTDYIKVGS--TSISTFAQAIADTGTSLIIAPQAQYDQISQLFNA----NSEG 305
            ||||.:.|||:.:.|.::|||  |...:..|||.|||||:|..|..:...:.:...|    ..|.
Zfish   263 YVNVTRKAYWQIKMDEVQVGSTLTLCKSGCQAIVDTGTSMITGPVQEVRALQKAIGAIPLLMGEY 327

  Fly   306 LFECSS-TSYPDLIININGVDFKIPAKYYIIEE---------EDFCSLAIQSINQDFWIMGDVFL 360
            ..:|.. .:.|.:..::.|..|.:..:.|:::.         ..|.::.|.......||:||||:
Zfish   328 WIDCKKIPTLPVVSFSLGGKMFNLTGQEYVMKMSHMGMNVCLSGFMAMDIPPPAGPLWILGDVFI 392

  Fly   361 GRIYTEFDVGNQRLGFAP 378
            ||.||.||....|:||||
Zfish   393 GRYYTVFDRDQDRVGFAP 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 139/330 (42%)
Asp 76..379 CDD:278455 138/323 (43%)
napsaNP_956325.1 A1_Propeptide 21..48 CDD:285240 7/26 (27%)
Cathepsin_D2 86..410 CDD:133157 137/326 (42%)
Asp 91..411 CDD:278455 138/323 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.890

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