DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and Bace2

DIOPT Version :10

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001002802.1 Gene:Bace2 / 288227 RGDID:1303241 Length:514 Species:Rattus norvegicus


Alignment Length:471 Identity:116/471 - (24%)
Similarity:188/471 - (39%) Gaps:116/471 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LVGEANSTLRRIPIQKSPNFKRSHKNIVAERDFVQQKYNRQYTANGYPMEHLSNYDNFQ------ 76
            :.|.||.....:|...:|...|:....:|...       .:.|||     .|:..||.|      
  Rat    35 VAGAANHRASTVPGLGTPELPRADGLALALEP-------ARATAN-----FLAMVDNLQGDSGRG 87

  Fly    77 YYGNISIGTPGQDFLVQFDTGSSNLWVPGS--SCISTACQDHQVFYKNKSSTYVANGTAFSITYG 139
            ||..:.||||.|...:..||||||..|.|:  |.|.|      .|....||||.:.|...::.|.
  Rat    88 YYLEMLIGTPPQKVRILVDTGSSNFAVAGAPHSYIDT------YFDSESSSTYHSKGFEVTVKYT 146

  Fly   140 TGSVSGYLSVDCV----GFAGLTIQSQTFGEVTTEQGTNFV--DAYFDGILGMGFPSLA--VDGV 196
            .||.:|::..|.|    ||.    .|......|..:..||.  ...::||||:.:.:||  ...:
  Rat   147 QGSWTGFVGEDLVTIPKGFN----SSFLVNIATIFESENFFLPGIKWNGILGLAYAALAKPSSSL 207

  Fly   197 TPTFQNMMQQGLVQSPVFSF-----FLRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYW 256
            ...|.:::.|..:.. :||.     .|...||.| .||.|:|||.:||||.|.:.|..:.:..|:
  Rat   208 ETFFDSLVAQAKIPD-IFSMQMCGAGLPVAGSGT-NGGSLVLGGIEPSLYKGDIWYTPIKEEWYY 270

  Fly   257 KFQTDYIKVGSTSIS------TFAQAIADTGTSLIIAPQAQYDQI------SQLFNANSEGLF-- 307
            :.:...:::|..|::      ...:||.|:||:|:..||..:|.:      :.|....|:|.:  
  Rat   271 QIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTG 335

  Fly   308 ---ECSSTS------YPDLIININGVDFKIPAKYYIIEEEDFCSLAIQ----------------S 347
               .|.:.|      :|.:.|.:...:.....:..|:.:     |.||                |
  Rat   336 AQLACWTNSETPWAYFPKISIYLRDENASRSFRITILPQ-----LYIQPMMGAGFNYECYRFGIS 395

  Fly   348 INQDFWIMGDVFLGRIYTEFDVGNQRLGFA-----------------PVNS---------AVGLR 386
            .:.:..::|...:...|..||...:|:|||                 |.::         |..|.
  Rat   396 SSTNALVIGATVMEGFYVVFDRAQRRVGFAVSPCAEIAGTTVSEISGPFSTEDIASNCVPAQALN 460

  Fly   387 KAVLWRI-FTLLLACG 401
            :.:||.: :.|:..||
  Rat   461 EPILWIVSYALMSVCG 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 Asp 76..379 CDD:394983 95/379 (25%)
Bace2NP_001002802.1 beta_secretase_like 85..446 CDD:133140 95/377 (25%)

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