DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgcl and Ctse

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_006249810.1 Gene:Ctse / 25424 RGDID:2446 Length:398 Species:Rattus norvegicus


Alignment Length:406 Identity:163/406 - (40%)
Similarity:230/406 - (56%) Gaps:44/406 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IKSLVFLAGLIVL--VGEANSTLRRIPIQKS-------------PNFKRSHKNIVAERDFVQQKY 55
            :|.|..|..|::|  :.:|...|.|:|:::.             .:|.||| |:    |.::  :
  Rat     1 MKPLFVLLLLLLLLDLAQAQGVLHRVPLRRHQSLRKKLRAQGQLSDFWRSH-NL----DMIE--F 58

  Fly    56 NRQYTANGYPMEHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFY 120
            :.....:....|.|.||.:.:|:|.:|||:|.|:|.|.|||||||||||...|.|.||:.|.||:
  Rat    59 SESCNVDKGINEPLINYLDMEYFGTVSIGSPSQNFTVIFDTGSSNLWVPSVYCTSPACKAHPVFH 123

  Fly   121 KNKSSTYVANGTAFSITYGTGSVSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILG 185
            .::||||:..|..|||.|||||::|.:..|.|...|||::.|.|||...|.|..||:|.||||||
  Rat   124 PSQSSTYMEVGNHFSIQYGTGSLTGIIGADQVSVEGLTVEGQQFGESVKEPGQTFVNAEFDGILG 188

  Fly   186 MGFPSLAVDGVTPTFQNMMQQGLVQSPVFSFFLRDN---GSVTFYGGELILGGSDPSLYSGSLTY 247
            :|:|||||.||||.|.|||.|.||..|:||.:|..:   ||    |.||..||.|||.:||||.:
  Rat   189 LGYPSLAVGGVTPVFDNMMAQNLVALPMFSVYLSSDPQGGS----GSELTFGGYDPSHFSGSLNW 249

  Fly   248 VNVVQAAYWKFQTDYIKVGSTSI--STFAQAIADTGTSLIIAPQAQYDQISQLFNA---NSEGLF 307
            :.|.:..||:...|.|:||.|.:  |...|||.|||||||..|..:..|:.:...|   :.|...
  Rat   250 IPVTKQGYWQIALDGIQVGDTVMFCSEGCQAIVDTGTSLITGPPKKIKQLQEAIGATPMDGEYAV 314

  Fly   308 ECSSTS-YPDLIININGVDFKIPAKYYI----IEEEDFCSLAIQSIN-----QDFWIMGDVFLGR 362
            :|::.: .|::...||||.:.:....||    ::...||....|.::     ...||:||||:.:
  Rat   315 DCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRK 379

  Fly   363 IYTEFDVGNQRLGFAP 378
            .|:.||.||.::|.||
  Rat   380 FYSVFDRGNNQVGLAP 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 146/328 (45%)
Asp 76..379 CDD:278455 144/321 (45%)
CtseXP_006249810.1 A1_Propeptide 23..51 CDD:285240 5/27 (19%)
Asp 79..396 CDD:278455 144/321 (45%)
pepsin_retropepsin_like 80..395 CDD:299705 142/318 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344978
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.860

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