DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and yps1

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_588035.1 Gene:yps1 / 2538927 PomBaseID:SPCC1795.09 Length:521 Species:Schizosaccharomyces pombe


Alignment Length:424 Identity:90/424 - (21%)
Similarity:157/424 - (37%) Gaps:100/424 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NIVAERDFVQQKYNRQ----------YTANG---YPMEHLSNYDNFQYYGNISIGTPGQDFLVQF 94
            |.|...|||.:.:..|          |:.:|   :|:: |.:|.  .|...:|||.|...:.|..
pombe    23 NGVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLD-LQSYT--YYTTTLSIGRPSISYTVAI 84

  Fly    95 DTGSSNLW----------------VPGSSCIST------AC--QDHQVFYKNKSST--YVANGTA 133
            |......|                |...:..||      .|  :....::.|.||:  :|.:.:.
pombe    85 DLDMPYTWLTYYNVMAFNPAYLGIVNSGTQWSTDELRYFLCKKESDSCYFGNASSSFHFVTSPST 149

  Fly   134 FSITYGTGSVSGYLSVDCVGFAGLTIQSQ------------TFGEVTTEQGTNFVDAYFDGILGM 186
            |.|.|.          |.:..||:.:|..            .|| :|.::........:.|:||:
pombe   150 FFIRYD----------DNITVAGINVQDSLSYSHYQALPDFQFG-ITLKEYVPSSMLPYKGVLGL 203

  Fly   187 GFPSLAVDGV----------TPTF-QNMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSL 240
            . .|..::.:          .||| :.::::.::..|.||.:|.:.|:     |.|:||..|.|.
pombe   204 A-ASTEINSIDYSDSISSFSPPTFLEQLVKEDILAYPAFSMYLDNQGN-----GSLLLGAVDTSK 262

  Fly   241 YSGSLTYVNVVQAAYWKFQTDYIK-VGSTSISTFA---QAIADTGTSLIIAP-QAQYDQISQLFN 300
            |.|....:...:..::......:: :.||..|.::   .|...|..:.|..| :..|   |.:.|
pombe   263 YQGQFVALKQTKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQTRETYIYLPAELAY---SVMDN 324

  Fly   301 AN---SEGLF--ECSSTSYPDLIININGVD--FKIPAKYYII-EEEDFCSLAIQSINQDFWIMGD 357
            |.   |||.|  .|........:|...|.:  .|:|....:| :..:.|.|.|:.......::|.
pombe   325 AGAYLSEGYFALNCDEIDLEAALIFQFGCNSTIKVPISLLVIGQVSNICLLGIRPSTDSEIVLGL 389

  Fly   358 VFLGRIYTEFDVGNQ--RLGFAPVNSAVGLRKAV 389
            :|....||.:....:  .:|.|..|:...|...|
pombe   390 LFFRNAYTFYHQSQKMIAIGQAFYNATSNLSAIV 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 77/374 (21%)
Asp 76..379 CDD:278455 76/366 (21%)
yps1NP_588035.1 Asp 66..411 CDD:278455 75/364 (21%)
pepsin_retropepsin_like 150..411 CDD:299705 59/280 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 97 1.000 Domainoid score I1884
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 97 1.000 Inparanoid score I1684
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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