DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgcl and asp-12

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_505134.1 Gene:asp-12 / 179210 WormBaseID:WBGene00017678 Length:395 Species:Caenorhabditis elegans


Alignment Length:393 Identity:132/393 - (33%)
Similarity:206/393 - (52%) Gaps:37/393 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAERD----FVQQK-----YNRQYTANGYPME 67
            |...:.::|..::|:    :|....::.|.|..:..|.    :||.|     .|....|:.  .:
 Worm     5 LLAFVAILGMCSATV----VQHKLIYRESPKMQMMRRGEWGAYVQHKAALRDANPAVFASA--PQ 63

  Fly    68 HLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVANGT 132
            :::::.:.:|.|||:||||.|.|:|..||||:|||||||:|..| |:....|..:||:|:..||.
 Worm    64 NVNDFGDVEYLGNITIGTPPQQFIVVLDTGSANLWVPGSNCDGT-CKGKSEFDSSKSTTFKKNGQ 127

  Fly   133 AFSITYGTGSVSGYLSVDCVGFAG-----LTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLA 192
            ::.|.|.:||..|.:.||.|.|.|     |.:.|.||| :.:...:||.:...:||||:.|.|||
 Worm   128 SWQIQYESGSAKGIMGVDTVAFGGASEQQLLVPSTTFG-IASHISSNFKNDAAEGILGLAFTSLA 191

  Fly   193 VDGVTPTFQNMMQQGLVQSPVFSFFLRDNGSVTFYGGELILGGSDPSLYSGS-LTYVNVVQAAYW 256
            ||||||...|.:.:.::..|:|:.||...|:....||.:...|:..:...|. :.|..:..|.|:
 Worm   192 VDGVTPPLINAINKKILDQPLFTVFLEHKGTAKNVGGGVFTYGAVDTTNCGPVIAYQPLSSATYY 256

  Fly   257 KFQTDYIKVGSTSISTFAQAIADTGTSLIIAPQAQYDQISQL----FNANSEGLFECSSTSYPDL 317
            :|..|..|:||.|.:..:|.|:|||:|||..|.|..:..:|.    ::::.:..:...|||...|
 Worm   257 QFVADGFKLGSYSNNKKSQVISDTGSSLIGGPSAVINGFAQALGAKYHSDDDAYYLPCSTSKGTL 321

  Fly   318 IININGVDFKIPAKYYIIE--EEDFCSLAIQSINQDF------WIMGDVFLGRIYTEFDVGNQRL 374
            .|.|.|..:.|....||::  ..|.|..|..|.  ||      ||.||.|:.:....:|:|.||:
 Worm   322 DITIGGNVYSIEPVNYILDVGMGDTCVFAAFSF--DFGGFGPSWIFGDPFIRQYCNIYDIGQQRI 384

  Fly   375 GFA 377
            |||
 Worm   385 GFA 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 120/329 (36%)
Asp 76..379 CDD:278455 120/320 (38%)
asp-12NP_505134.1 Asp 72..388 CDD:365818 120/320 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162020
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.850

Return to query results.
Submit another query.