DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and Ctsd

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_034113.1 Gene:Ctsd / 13033 MGIID:88562 Length:410 Species:Mus musculus


Alignment Length:411 Identity:158/411 - (38%)
Similarity:226/411 - (54%) Gaps:44/411 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LVFLAGLIVLVGEANSTLRRIPIQKSPNFKRSHKNIVAE-RDFVQQKYNRQYTANGYP------M 66
            |:.:.||:   ..::..:.|||::|..:.:|:...:... .|.:.:....:|:....|      .
Mouse     7 LLLILGLL---ASSSFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVS 68

  Fly    67 EHLSNYDNFQYYGNISIGTPGQDFLVQFDTGSSNLWVPGSSC--ISTACQDHQVFYKNKSSTYVA 129
            |.|.||.:.||||:|.||||.|.|.|.|||||||||||...|  :..||..|..:..:||||||.
Mouse    69 ELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVK 133

  Fly   130 NGTAFSITYGTGSVSGYLSVDCVGF---------AGLTIQSQTFGEVTTEQGTNFVDAYFDGILG 185
            |||:|.|.||:||:|||||.|.|..         .|:.::.|.|||.|.:.|..||.|.||||||
Mouse   134 NGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILG 198

  Fly   186 MGFPSLAVDGVTPTFQNMMQQGLVQSPVFSFFL-RD-NGSVTFYGGELILGGSDPSLYSGSLTYV 248
            ||:|.::|:.|.|.|.|:|||.||...:|||:| || .|..   ||||:|||:|...|.|.|:|:
Mouse   199 MGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQP---GGELMLGGTDSKYYHGELSYL 260

  Fly   249 NVVQAAYWKFQTDYIKVGS--TSISTFAQAIADTGTSLIIAPQAQYDQISQLFNA----NSEGLF 307
            ||.:.|||:...|.::||:  |......:||.||||||::.|..:..::.:...|    ..|.:.
Mouse   261 NVTRKAYWQVHMDQLEVGNELTLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGEYMI 325

  Fly   308 ECSS-TSYPDLIININGVDFKIPAKYYIIEEED---------FCSLAIQSINQDFWIMGDVFLGR 362
            .|.. :|.|.:.:.:.|.::::....||::...         |..:.|...:...||:||||:|.
Mouse   326 PCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGS 390

  Fly   363 IYTEFDVGNQRLGFAPVNSAV 383
            .||.||..|.|:|||  |:.|
Mouse   391 YYTVFDRDNNRVGFA--NAVV 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 144/339 (42%)
Asp 76..379 CDD:278455 141/331 (43%)
CtsdNP_034113.1 A1_Propeptide 21..46 CDD:285240 5/24 (21%)
Cathepsin_D2 73..405 CDD:133157 141/334 (42%)
Asp 78..407 CDD:278455 141/333 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.890

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