DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgcl and Pgc

DIOPT Version :9

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_080249.2 Gene:Pgc / 109820 MGIID:98909 Length:392 Species:Mus musculus


Alignment Length:383 Identity:147/383 - (38%)
Similarity:210/383 - (54%) Gaps:36/383 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 STLRRIPIQKSPNFKRSHKNIVAERDFVQ-------QKYN----RQYTANGYPMEHLSNYDNFQY 77
            :.|.|:|::|..:.:.:.|.....:||::       |||:    ..|:....||.    |.:..|
Mouse    16 AALIRVPLKKMKSIRETMKEQGVLKDFLKNHKYDPGQKYHFGKFGDYSVLYEPMA----YMDASY 76

  Fly    78 YGNISIGTPGQDFLVQFDTGSSNLWVPGSSCISTACQDHQVFYKNKSSTYVANGTAFSITYGTGS 142
            ||.||||||.|:|||.||||||||||....|.|.||..|..:..:|||||...|..||:.|||||
Mouse    77 YGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQSEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGS 141

  Fly   143 VSGYLSVDCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDGVTPTFQNMMQQG 207
            ::|:...|.:....:.:.:|.||....|.|||||.|.||||:|:.:|.|:..|.|...|.|:.:|
Mouse   142 LTGFFGYDTLRVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGATTALQGMLGEG 206

  Fly   208 LVQSPVFSFFL-RDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKFQTDYIKVGSTS-- 269
            .:..|:|..:| ...||   .||:::.||.|.:||:|.||::.|.|..||:...|...:|:.:  
Mouse   207 ALSQPLFGVYLGSQQGS---NGGQIVFGGVDENLYTGELTWIPVTQELYWQITIDDFLIGNQASG 268

  Fly   270 --ISTFAQAIADTGTSLIIAPQAQYDQISQLFNANSEGLF-----ECSS-TSYPDLIININGVDF 326
              .|:..|.|.||||||::.|....:::.|...| .||.:     .|.| :|.|.|...:|||.|
Mouse   269 WCSSSGCQGIVDTGTSLLVMPAQYLNELLQTIGA-QEGEYGQYFVSCDSVSSLPTLTFVLNGVQF 332

  Fly   327 KIPAKYYIIEEEDFCSLAIQSIN------QDFWIMGDVFLGRIYTEFDVGNQRLGFAP 378
            .:....|||:||..|.:.::|::      |..||:|||||...|..||:||.|:|.||
Mouse   333 PLSPSSYIIQEEGSCMVGLESLSLNAESGQPLWILGDVFLRSYYAVFDMGNNRVGLAP 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 pepsin_retropepsin_like 67..378 CDD:299705 132/327 (40%)
Asp 76..379 CDD:278455 133/320 (42%)
PgcNP_080249.2 A1_Propeptide 18..46 CDD:285240 7/27 (26%)
pepsin_retropepsin_like 73..391 CDD:299705 133/322 (41%)
Asp 75..390 CDD:278455 131/318 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 297 1.000 Domainoid score I1457
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 307 1.000 Inparanoid score I2599
Isobase 1 0.950 - 0 Normalized mean entropy S1195
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1456
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.830

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