DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgcl and ren

DIOPT Version :10

Sequence 1:NP_525030.1 Gene:Pgcl / 30984 FlyBaseID:FBgn0011822 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_017947014.2 Gene:ren / 100487524 XenbaseID:XB-GENE-480535 Length:395 Species:Xenopus tropicalis


Alignment Length:378 Identity:140/378 - (37%)
Similarity:207/378 - (54%) Gaps:30/378 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RRIPIQKSPNFKRSHKNI-VAERD-FVQQKYNR---QYTANGYPMEHLSNYDNFQYYGNISIGTP 86
            ||||:.:.|:.:.:.::: |...| |.|.:...   :...||.....|:||.:.||:|.||||:|
 Frog    18 RRIPLNRMPSIRETLQSMGVKVTDAFPQLRMKALADKNPNNGTAPTVLTNYMDTQYFGEISIGSP 82

  Fly    87 GQDFLVQFDTGSSNLWVPGSSC--ISTACQDHQVFYKNKSSTYVANGTAFSITYGTGSVSGYLSV 149
            .|.|.|.|||||:|||||...|  :.:||..|..:...||.||:.||..|||.||:|.|.|:||.
 Frog    83 PQTFKVVFDTGSANLWVPSQRCSPLYSACVSHNRYDSTKSQTYMENGAGFSIQYGSGGVKGFLSQ 147

  Fly   150 DCVGFAGLTIQSQTFGEVTTEQGTNFVDAYFDGILGMGFPSLAVDGVTPTFQNMMQQGLVQSPVF 214
            |.|..||:.: .|.|.|.|......|:.|.|||:||||||..|:||:||.|..::.:.::|..||
 Frog   148 DVVVVAGIPV-IQVFAEATALPAFPFIFARFDGVLGMGFPGQAIDGITPVFDRIISEQVLQEDVF 211

  Fly   215 SFF----LRDNGSVTFYGGELILGGSDPSLYSGSLTYVNVVQAAYWKFQTDYIKVGSTSI--STF 273
            |.:    .||  |....|||:||||||||.|:||..|:|:.:..||..:...:.:|:..:  ...
 Frog   212 SVYYSRSYRD--SHLKPGGEIILGGSDPSYYTGSFQYLNLEKEGYWHIRMKGVSIGAEILFCKDG 274

  Fly   274 AQAIADTGTSLIIAPQAQYDQISQLFNAN--SEGLF--ECSSTS-YPDLIININGVDFKIPAKYY 333
            .....|||.:.|..|.:....:.:...|.  :||.:  :|...| .||:..::.|.::.:....|
 Frog   275 CSVAIDTGAAYITGPASSVSVLMKAIGATELAEGEYTVDCDKISQLPDVSFHMGGNEYTLKGPAY 339

  Fly   334 IIEE----EDFCSLAIQSIN-----QDFWIMGDVFLGRIYTEFDVGNQRLGFA 377
            |:::    |:.||:|...::     ...||:|..|:|:.|||||..|.|:|||
 Frog   340 ILQQSQFGEEICSVAFTPLDIPPPVGPLWILGASFIGQYYTEFDRRNNRIGFA 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgclNP_525030.1 Asp 76..379 CDD:394983 126/324 (39%)
renXP_017947014.2 A1_Propeptide 19..>33 CDD:462326 4/13 (31%)
pepsin_retropepsin_like 65..394 CDD:472175 129/331 (39%)

Return to query results.
Submit another query.