DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and AT5G51790

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001332480.1 Gene:AT5G51790 / 835253 AraportID:AT5G51790 Length:269 Species:Arabidopsis thaliana


Alignment Length:216 Identity:49/216 - (22%)
Similarity:83/216 - (38%) Gaps:44/216 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQNMQQSQQ--------SNVGPMLSSQ-- 67
            ||.::....||.......:....:.::| |.| ||.|:..::.::        |...||..|.  
plant    10 HYLVSLLCFFLSSKIKEDRPNYVRAVSP-INL-TSSLEKTREKKKRLLLRSTISKPQPMNPSNNP 72

  Fly    68 KKKFNYNNMPY----GEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKK 128
            ||..:.::||.    .::...:..||. ||.|.:::...|.:||..||...:    .|.|..|  
plant    73 KKTRHQSHMPQERDETKKEKKLLHRNI-ERQRRQEMAILFASLRSQLPLKYI----KGKRAMS-- 130

  Fly   129 LSKVDTLRIAVEYIRGLQDMLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQ 193
                |.:..||.:|:..|..:.|.:|..........|.:|..||...             :|:::
plant   131 ----DHVNGAVSFIKDTQTRIKDLSARRDELKREIGDPTSLTGSGSG-------------SGSSR 178

  Fly   194 SAQSHSYHSASPTPSYSGSEI 214
            |..:    |....|..||.|:
plant   179 SEPA----SVMVQPCVSGFEV 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 12/49 (24%)
Peptidase_C11 <128..218 CDD:304483 18/87 (21%)
AT5G51790NP_001332480.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13935
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.