DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and AT4G25400

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001329398.1 Gene:AT4G25400 / 828643 AraportID:AT4G25400 Length:187 Species:Arabidopsis thaliana


Alignment Length:123 Identity:29/123 - (23%)
Similarity:55/123 - (44%) Gaps:22/123 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 MLSSQKKKFNYNNMP----YGEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGR 123
            |.:.|:||...:..|    ..|.:..:..:...:|.| :::.:.:.:||..||...:    .|.|
plant     1 MNNFQEKKRRRSKTPRVCNNEENMEKLVHKEIEKRRR-QEMASLYASLRSLLPLEFI----QGKR 60

  Fly   124 GSSKKLSKVDTLRIAVEYI----RGLQDM---LDDGTASSTRHIYNSADESSNDGSSY 174
            .:|      |.::.||.||    |.::|:   .||....|.|...:|.::..|:.|::
plant    61 STS------DQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFRSSNEQEWNEISNH 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 13/53 (25%)
Peptidase_C11 <128..218 CDD:304483 14/54 (26%)
AT4G25400NP_001329398.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13935
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.