DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and AT1G10586

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001117258.1 Gene:AT1G10586 / 6240488 AraportID:AT1G10586 Length:174 Species:Arabidopsis thaliana


Alignment Length:97 Identity:22/97 - (22%)
Similarity:40/97 - (41%) Gaps:16/97 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 GEQLPSVAR--RNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEY 141
            ||...|..|  ||.||:.|..::.:.|..|..|:..|             ::|.....:..||.|
plant     8 GEGSASSLREQRNLREKERRMRMKHLFSILSSHVSPT-------------RRLPVPQLIDQAVSY 59

  Fly   142 IRGLQDMLDDGTASSTRHIYNSADESSNDGSS 173
            :..|::.: :......|.:.....::.::|||
plant    60 MIQLKEKV-NYLNEMKRRMLGGEVKNRSEGSS 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 8/49 (16%)
Peptidase_C11 <128..218 CDD:304483 9/46 (20%)
AT1G10586NP_001117258.1 HLH 16..67 CDD:320748 15/63 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13935
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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