DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and NEUROD4

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_067014.2 Gene:NEUROD4 / 58158 HGNCID:13802 Length:331 Species:Homo sapiens


Alignment Length:237 Identity:52/237 - (21%)
Similarity:87/237 - (36%) Gaps:66/237 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 TQQHQLIAPKIPLGTSQLQNMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARR---NARER 93
            |::|           ..::..::.::....|.....|||    .|.........|||   |||||
Human    48 TEEH-----------DSIEEEEEEEEDGEKPKRRGPKKK----KMTKARLERFRARRVKANARER 97

  Fly    94 NRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLDDGTASSTR 158
            .|:..:|:...|||:.:|          ....::||||::|||:|..||..|.::|:.|.....:
Human    98 TRMHGLNDALDNLRRVMP----------CYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGK 152

  Fly   159 HIYNSADESSNDGSS------------------YNDYNDSLDSSQQFLTGATQSAQSHSYHSAS- 204
            .......:..:..:|                  :.|.:...||:        .|..:.:|.|.. 
Human   153 GFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSA--------ISVHNFNYQSPGL 209

  Fly   205 PTPSYSGSEISGGGYIKQ---ELQEQDLKFDSFDSFSDEQPD 243
            |:|.|        |:::.   .|:.|..|.....||....||
Human   210 PSPPY--------GHMETHLLHLKPQVFKSLGESSFGSHLPD 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 17/54 (31%)
NEUROD4NP_067014.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..80 7/46 (15%)
bHLH_TS_NeuroD4_ATOH3 59..145 CDD:381564 31/99 (31%)
Neuro_bHLH 146..264 CDD:463621 19/114 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 246..265
Blue background indicates that the domain is not in the aligned region.

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