DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and ASCL3

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_065697.1 Gene:ASCL3 / 56676 HGNCID:740 Length:181 Species:Homo sapiens


Alignment Length:134 Identity:41/134 - (30%)
Similarity:54/134 - (40%) Gaps:39/134 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 NYNNMPYGEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLR 136
            ||....|........:||.|||.|||.||.|:..||.|||:..:          .|:||||:|||
Human    82 NYRGCEYSYGPAFTRKRNERERQRVKCVNEGYAQLRHHLPEEYL----------EKRLSKVETLR 136

  Fly   137 IAVEYIRGLQDMLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSYH 201
            .|::||..||.:|           |....|:.|:                  .|...|..:.:.|
Human   137 AAIKYINYLQSLL-----------YPDKAETKNN------------------PGKVSSMIATTSH 172

  Fly   202 SASP 205
            .|.|
Human   173 HADP 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 24/54 (44%)
ASCL3NP_065697.1 bHLH_TS_ASCL3 91..149 CDD:381588 29/67 (43%)
Basic motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00981 93..106 5/12 (42%)
Helix-loop-helix motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00981 107..145 20/47 (43%)

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