DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Msgn1

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_062417.1 Gene:Msgn1 / 56184 MGIID:1860483 Length:188 Species:Mus musculus


Alignment Length:70 Identity:22/70 - (31%)
Similarity:37/70 - (52%) Gaps:11/70 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SVARR---NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGL 145
            ||.||   :.||:.|::.:.:....||.:||...      ..||  :.|:|:.||:..::||..|
Mouse   116 SVQRRRKASEREKLRMRTLADALHTLRNYLPPVY------SQRG--QPLTKIQTLKYTIKYIGEL 172

  Fly   146 QDMLD 150
            .|:|:
Mouse   173 TDLLN 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 15/54 (28%)
Msgn1NP_062417.1 bHLH_TS_Msgn1 112..177 CDD:381509 21/68 (31%)

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