DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and bhlhe23

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001025304.1 Gene:bhlhe23 / 559796 ZFINID:ZDB-GENE-050913-22 Length:227 Species:Danio rerio


Alignment Length:108 Identity:28/108 - (25%)
Similarity:48/108 - (44%) Gaps:20/108 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 QQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARR--------NARERNRVKQVNNGFVNLRQH 109
            |.|.:.:....|.|:|:...::...:...|...::.        |||||.|:..:|:....||..
Zfish    66 QTSDEDDGFDNLESRKRGAGFDEEKHPGSLTKKSKEQRSLRLSINARERRRMHDLNDALDGLRSV 130

  Fly   110 LPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI----RGLQDM 148
            :|.....|:        :||||:.||.:|..||    :.|::|
Zfish   131 IPYAHSPSV--------RKLSKIATLLLAKNYILMQAQALEEM 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 17/59 (29%)
bhlhe23NP_001025304.1 bHLH_TS_bHLHe23_bHLHb4 100..179 CDD:381523 22/74 (30%)

Return to query results.
Submit another query.