DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and MESP1

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_061140.1 Gene:MESP1 / 55897 HGNCID:29658 Length:268 Species:Homo sapiens


Alignment Length:104 Identity:29/104 - (27%)
Similarity:43/104 - (41%) Gaps:23/104 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 PSVARRNA---------------RERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKV 132
            |||.||.|               ||:.|::.:......||:.||.:|.        .:.:.|:|:
Human    67 PSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPSVA--------PAGQSLTKI 123

  Fly   133 DTLRIAVEYIRGLQDMLDDGTASSTRHIYNSADESSNDG 171
            :|||:|:.||..|..:|.....|..|......|..|..|
Human   124 ETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRG 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 13/49 (27%)
Peptidase_C11 <128..218 CDD:304483 15/44 (34%)
MESP1NP_061140.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 17..93 8/25 (32%)
bHLH_TS_Mesp 83..147 CDD:381508 18/71 (25%)
CPLCP 163..167 29/104 (28%)
2 X 2 AA tandem repeats of G-Q 182..185
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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