DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and tcf21

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001032770.1 Gene:tcf21 / 558148 ZFINID:ZDB-GENE-051113-88 Length:176 Species:Danio rerio


Alignment Length:158 Identity:44/158 - (27%)
Similarity:72/158 - (45%) Gaps:20/158 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 GTS--QLQNMQQSQQSNVGPMLSSQKKKFNY-NNMPYG--EQLPSVARR--NARERNRVKQVNNG 102
            |||  ..::....:.::|......::|..|. .:.|.|  ::...|.|.  |||||.|::.::..
Zfish    31 GTSNESTEDSSNCEGASVSECTGKRRKSANMRRSAPNGVAQEGKQVQRNAANARERARMRVLSKA 95

  Fly   103 FVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDML-DDGTASSTRHIYNSADE 166
            |..|:..||....::          ||||:||||:|..||..|:.:| :|...:...|..|....
Zfish    96 FSRLKTTLPWVPPDT----------KLSKLDTLRLASSYIAHLRQILANDKYENGYIHPVNLTWP 150

  Fly   167 SSNDGSSYNDYNDSLDSSQQFLTGATQS 194
            ....|...|:..:.|:|::  |.|.|.|
Zfish   151 FMVAGKPENELKEMLNSTR--LCGTTAS 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 15/49 (31%)
Peptidase_C11 <128..218 CDD:304483 24/68 (35%)
tcf21NP_001032770.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..84 11/52 (21%)
HLH 77..129 CDD:278439 22/61 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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