DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Neurod2

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_062199.2 Gene:Neurod2 / 54276 RGDID:3166 Length:382 Species:Rattus norvegicus


Alignment Length:218 Identity:52/218 - (23%)
Similarity:76/218 - (34%) Gaps:71/218 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 RRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLDD 151
            :.|||||||:..:|....|||:.:|          ....::||||::|||:|..||..|.::|..
  Rat   125 KANARERNRMHDLNAALDNLRKVVP----------CYSKTQKLSKIETLRLAKNYIWALSEILRS 179

  Fly   152 ---------------GTASSTRHIY---------NSADESSNDGSS-------------YNDYND 179
                           |.:..|.::.         |...|...||:.             | .|..
  Rat   180 GKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPY-PYPC 243

  Fly   180 SLDSSQQFLT------GATQSAQSHSYHSASPT-----------PSYSGSEISGGGYIKQELQEQ 227
            |..:..|...      ||..:.::|.|.:|..|           |.|:.||..|      .|...
  Rat   244 SRLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEG------PLSPP 302

  Fly   228 DLKFDSFDSFSDEQPDDEELLDY 250
            .....:|....|..||.|:...|
  Rat   303 LCLNGNFSLKQDSSPDHEKSYHY 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 18/54 (33%)
Neurod2NP_062199.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..129 1/3 (33%)
bHLH_TS_NeuroD2 88..180 CDD:381563 24/64 (38%)
Nuclear localization signal. /evidence=ECO:0000255 107..113
Neuro_bHLH 180..310 CDD:463621 22/136 (16%)
Blue background indicates that the domain is not in the aligned region.

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