Protein Alignment l(1)sc and Atoh1

DIOPT Version :10

• Sequence 1: NP_476623.1
• Gene: l(1)sc / 30983
• FlyBaseID: FBgn0002561
• Length: 257
• Species: Drosophila melanogaster
• Sequence 2: NP_001102708.1
• Gene: Atoh1 / 500156
• RGDID: 1565171
• Length: 351
• Species: Rattus norvegicus
• Alignment Length: 181
• Identity: 48/181 - (26%)
• Similarity: 73/181 - (40%)
• Gaps: 52/181 - (28%)

  Fly    77 PYGEQLPSVARR-----NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLR 136
            |..:|:..|.::     |||||.|:..:|:.|..||..:|     |.:|     .|||||.:||:
  Rat   145 PSSKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVIP-----SFNN-----DKKLSKYETLQ 199

  Fly   137 IAVEYIRGLQDMLDDGT--------ASSTR----HIYNSADESSNDGSSYNDYNDSLDSSQQFLT 189
            :|..||..|.::|...:        |:|.:    |:..:|......|:|
  Rat   200 MAQIYINALSELLQTPSVGEQPPPPAASCKNDHHHLRAAASYEGGAGAS---------------- 248

  Fly   190 GATQSAQSHSYHSASPTP-----SYSGSEISGGGYIKQELQEQDLKFDSFD 235
             |...||........|||     :...:..|.|||   .:|...|.|.:|:
  Rat   249 -AVAGAQPAPGGGPRPTPPGACRTRFSTPASSGGY---SVQLDALHFPAFE 295

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
l(1)sc	NP_476623.1	bHLH_TS_dAS-C_like	94..149	CDD:381587	19/54 (35%)
Atoh1	NP_001102708.1	bHLH_TS_ATOH1	152..215	CDD:381556	26/72 (36%)