DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and FIGLA

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001004311.2 Gene:FIGLA / 344018 HGNCID:24669 Length:219 Species:Homo sapiens


Alignment Length:175 Identity:51/175 - (29%)
Similarity:75/175 - (42%) Gaps:40/175 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 APKIPLGTSQLQNMQQSQQSNVGPMLSSQKKKFNYNNMPYG-----EQLPSVARR----NARERN 94
            ||...|||.|.:.::...:...|| |...........:|.|     |.|..|..|    ||:||.
Human    13 APPALLGTPQAEVLEDVLREQFGP-LPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVANAKERE 76

  Fly    95 RVKQVNNGFVNLR---QHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLDDGTASS 156
            |:|.:|.||..|:   ..|||             |:|.||||.|:.|.|||:.|.|:|:....|.
Human    77 RIKNLNRGFARLKALVPFLPQ-------------SRKPSKVDILKGATEYIQVLSDLLEGAKDSK 128

  Fly   157 TRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSYH 201
                     :...|..||::     :||:...:.|.|.:::.:.|
Human   129 ---------KQDPDEQSYSN-----NSSESHTSSARQLSRNITQH 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 22/57 (39%)
FIGLANP_001004311.2 bHLH_TS_FIGLA 67..122 CDD:381428 26/67 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..151 7/40 (18%)

Return to query results.
Submit another query.