DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and tx

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_061501505.1 Gene:tx / 3290921 VectorBaseID:AGAMI1_010116 Length:444 Species:Anopheles gambiae


Alignment Length:248 Identity:65/248 - (26%)
Similarity:109/248 - (43%) Gaps:61/248 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SICSSKFQQQ---HYQLTNSNIFLLQHQHHHQTQQ--HQLIAPKIPLGTSQLQN----------- 51
            ||.:..|.||   ...:.::|      .:|:::..  |.|:..    ||..|.:           
Mosquito     8 SISAITFNQQPSMEAPMADAN------NNHNESGYVGHHLMGD----GTGSLVSEIKKDEKYSLR 62

  Fly    52 MQQSQQSNVGPMLSSQ---------KKKFNYNNMPYGEQLP-SVARR---NARERNRVKQVNNGF 103
            .:||:::.:.....|:         |:|......|..:..| |..||   |||||:|::::|:.|
Mosquito    63 QRQSRRTTLETATISKTTTKTTTTTKEKAAPKEKPKPKAAPLSKYRRKTANARERSRMREINSAF 127

  Fly   104 VNLRQHLPQTVVNSLS----------NGGRGSSKKLSKVDTLRIAVEYIRGLQDMLDDGTASSTR 158
            .|||:.:|..|..:..          :|...||:||:|:.|||:|::|||.|.||: .||..:. 
Mosquito   128 ENLRRAVPVAVAGTSGTSSPVSSPQCSGSAASSEKLTKITTLRLAMKYIRILSDMI-HGTPGTL- 190

  Fly   159 HIYNSADESSN--DGSSYNDY-NDSLDSSQQFLTGATQSAQSHSYHSASPTPS 208
                   |::|  |..::|:. .:.:......|.|..|......|.|:||..|
Mosquito   191 -------ENNNELDMVNHNEIEREVMQKGLLLLEGGYQMGGPGGYVSSSPAVS 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 23/64 (36%)
txXP_061501505.1 None

Return to query results.
Submit another query.