DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and HLH4C

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster


Alignment Length:81 Identity:29/81 - (35%)
Similarity:40/81 - (49%) Gaps:16/81 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 RERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDML----DD 151
            |||.||:..|..|..||:.||..          ...|||||::.|::|:.||..|..:|    |.
  Fly   116 RERIRVEAFNVSFAELRKLLPTL----------PPDKKLSKIEILKLAICYIAYLNHVLETPXDS 170

  Fly   152 GTASS--TRHIYNSAD 165
            ..|||  |..::|.|:
  Fly   171 AGASSFATSCLFNEAN 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 18/54 (33%)
HLH4CNP_001259243.1 bHLH_TS_HEN1 105..165 CDD:381544 21/58 (36%)

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