DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and ase

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_476694.1 Gene:ase / 30985 FlyBaseID:FBgn0000137 Length:486 Species:Drosophila melanogaster


Alignment Length:236 Identity:80/236 - (33%)
Similarity:102/236 - (43%) Gaps:79/236 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KIPLGTSQLQNM--QQSQQ---SNVGPMLSSQKKKFNYNNMP----------------------Y 78
            |.|||.||.||.  ||:||   ::|........||......|                      .
  Fly    89 KRPLGESQKQNRHNQQNQQLSKTSVPAKKCKTNKKLAVERPPKAGTISHPHKSQSDQSFGTPGRK 153

  Fly    79 GEQLP-SVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSL--SNGGRGSSKKLSKVDTLRIAVE 140
            |..|| :|||||||||||||||||||..||:.:|:.|..:.  ...|||:|||||||:|||:|||
  Fly   154 GLPLPQAVARRNARERNRVKQVNNGFALLREKIPEEVSEAFEAQGAGRGASKKLSKVETLRMAVE 218

  Fly   141 YIRGLQDMLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSYHSASP 205
            |||.|:.:|                     |..:...|                :|.:|      
  Fly   219 YIRSLEKLL---------------------GFDFPPLN----------------SQGNS------ 240

  Fly   206 TPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEE 246
                |||......:||.|....|..||  ||.|:.:.|:::
  Fly   241 ----SGSGDDSFMFIKDEFDCLDEHFD--DSLSNYEMDEQQ 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 34/56 (61%)
aseNP_476694.1 bHLH_TS_dAS-C_like 170..227 CDD:381587 34/56 (61%)

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