Protein Alignment l(1)sc and Neurod4

DIOPT Version :10

• Sequence 1: NP_476623.1
• Gene: l(1)sc / 30983
• FlyBaseID: FBgn0002561
• Length: 257
• Species: Drosophila melanogaster
• Sequence 2: NP_001099412.2
• Gene: Neurod4 / 288821
• RGDID: 1310434
• Length: 330
• Species: Rattus norvegicus
• Alignment Length: 257
• Identity: 60/257 - (23%)
• Similarity: 100/257 - (38%)
• Gaps: 55/257 - (21%)

  Fly    15 QLTNSNIFL---LQHQHHHQTQQHQLIAPKIP-----LGT-----SQLQNMQQSQQSNVGPMLSS 66
            :|.|:..::   |..|:..:.|:.:      |     |||     ..::..::.::....|....
  Rat    13 ELVNTQSWMDKGLSSQNEMEEQERR------PGSYGMLGTLMEEHDSIEEEEEEEEDGDKPKRRG 71

  Fly    67 QKKKFNYNNMPYGEQLPSVARR---NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKK 128
            .|||    .|.........|||   |||||.|:..:|:...|||:.:|          ....::|
  Rat    72 PKKK----KMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMP----------CYSKTQK 122

  Fly   129 LSKVDTLRIAVEYIRGLQDMLDDGTASSTRHIYNSADESSNDGSS--------YNDYNDSLDSSQ 185
            |||::|||:|..||..|.::|:.|.....:.......:..:..:|        ....:..|:..:
  Rat   123 LSKIETLRLARNYIWALSEVLETGQTLEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSALLEKRE 187

  Fly   186 QF--LTGATQSAQSHSYHSAS-PTPSYSGSEISGGGYIKQELQEQDLKFDSF-DSFSDEQPD 243
            :.  :..:|.|..|.:|.|.. |:|.|...|       ...|..:...|.|. |||....||
  Rat   188 EKSPICDSTVSVHSFNYQSPGLPSPPYGHME-------THPLHLKPQPFKSLGDSFGSHPPD 242

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
l(1)sc	NP_476623.1	bHLH_TS_dAS-C_like	94..149	CDD:381587	17/54 (31%)
Neurod4	NP_001099412.2	bHLH_TS_NeuroD4_ATOH3	59..145	CDD:381564	31/99 (31%)
		Neuro_bHLH	146..263	CDD:463621	20/104 (19%)