DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Figla

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_036143.1 Gene:Figla / 26910 MGIID:1349421 Length:194 Species:Mus musculus


Alignment Length:214 Identity:57/214 - (26%)
Similarity:91/214 - (42%) Gaps:69/214 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 APKIP---LGTSQLQNMQQSQQSNVGPM-----LSSQKKKFNYNNMPYG-----EQLPSVARR-- 88
            ||..|   |.|.|.:.:::..|:.:||:     :...|:      :|.|     :.|..|..|  
Mouse     4 APASPEPFLVTPQAEVLEELIQAQMGPLPRLAAICRLKR------LPSGGYSTTDDLHLVLERRR 62

  Fly    89 --NARERNRVKQVNNGFVNLR---QHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDM 148
              ||:||.|:|.:|.||..|:   ..|||             |:|.||||.|:.|.|||:.|..:
Mouse    63 VANAKERERIKNLNRGFAKLKALVPFLPQ-------------SRKPSKVDILKGATEYIQILGCV 114

  Fly   149 LDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQ-------------------- 193
            |::...|..:    |.:|.::.|...:.:   :.|:::.|..|||                    
Mouse   115 LEEAKVSEKQ----SPEEQTHSGRPSDPH---VSSTRELLGNATQPTSCASGLKKEEEGPWAYAG 172

  Fly   194 -SAQSHSYHSAS--PTPSY 209
             |...:|||.::  .|.||
Mouse   173 HSEPLYSYHQSTVPETRSY 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 19/52 (37%)
Peptidase_C11 <128..218 CDD:304483 28/105 (27%)
FiglaNP_036143.1 HLH 59..116 CDD:238036 26/69 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..163 9/48 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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