DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Neurog1

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_035026.1 Gene:Neurog1 / 18014 MGIID:107754 Length:244 Species:Mus musculus


Alignment Length:123 Identity:34/123 - (27%)
Similarity:47/123 - (38%) Gaps:29/123 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 APKIPLGTSQLQNMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARR------NARERNRVK 97
            ||.:. |.|.:...|..:|         ::::.........|.|....||      |.|||||:.
Mouse    53 APALS-GASNVPGAQDEEQ---------ERRRRRGRARVRSEALLHSLRRSRRVKANDRERNRMH 107

  Fly    98 QVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDML---DDG 152
            .:|.....||..||..          ....||:|::|||.|..||..|.:.|   |.|
Mouse   108 NLNAALDALRSVLPSF----------PDDTKLTKIETLRFAYNYIWALAETLRLADQG 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 17/54 (31%)
Neurog1NP_035026.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..82 6/38 (16%)
bHLH_TS_NGN1_NeuroD3 83..154 CDD:381559 26/80 (33%)
Blue background indicates that the domain is not in the aligned region.

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