DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and MESP2

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001035047.1 Gene:MESP2 / 145873 HGNCID:29659 Length:397 Species:Homo sapiens


Alignment Length:73 Identity:24/73 - (32%)
Similarity:38/73 - (52%) Gaps:11/73 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 PYGEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEY 141
            |.|.|..|.:.   ||:.|::.:......||:.||.    ||:..|    :.|:|::|||:|:.|
Human    78 PAGGQRQSASE---REKLRMRTLARALHELRRFLPP----SLAPAG----QSLTKIETLRLAIRY 131

  Fly   142 IRGLQDML 149
            |..|..:|
Human   132 IGHLSAVL 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 15/49 (31%)
Peptidase_C11 <128..218 CDD:304483 10/22 (45%)
MESP2NP_001035047.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..92 6/16 (38%)
HLH 82..135 CDD:278439 20/63 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 152..208
13 X 2 AA tandem repeats of G-Q 179..204
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..295
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 351..376
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.