DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and net

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_061512460.1 Gene:net / 1279405 VectorBaseID:AGAMI1_011387 Length:432 Species:Anopheles gambiae


Alignment Length:168 Identity:46/168 - (27%)
Similarity:70/168 - (41%) Gaps:47/168 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KFQQQHYQLTNSNIFLLQHQHH-HQTQQHQLIAPKIPL---GTSQLQNMQQS----------QQS 58
            :.|:||           .|.|| |.:.....:.|:.|.   ||:......:|          ..|
Mosquito   269 ELQEQH-----------AHLHHSHASSGPLFVQPRAPPSLDGTNDSITDHESTVASGGHGGKSSS 322

  Fly    59 NVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGR 123
            ..|..:|..:   ||.||....::.:    |||||.||..::..:..||:.:|     :.||   
Mosquito   323 GSGGAISQTR---NYKNMTRERRIEA----NARERTRVHTISAAYEKLRRAIP-----AYSN--- 372

  Fly   124 GSSKKLSKVDTLRIAVEYIRGL-----QDMLDDGTASS 156
              ::||||:..||||..||..|     :|..:||:..|
Mosquito   373 --AQKLSKLSILRIACSYILTLSRMAGEDYSEDGSEPS 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 19/59 (32%)
netXP_061512460.1 None

Return to query results.
Submit another query.