DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Neurog2

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_033848.1 Gene:Neurog2 / 11924 MGIID:109619 Length:263 Species:Mus musculus


Alignment Length:151 Identity:38/151 - (25%)
Similarity:60/151 - (39%) Gaps:50/151 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 RRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYI--------- 142
            :.|.|||||:..:|.....||:.||....::          ||:|::|||.|..||         
Mouse   116 KANNRERNRMHNLNAALDALREVLPTFPEDA----------KLTKIETLRFAHNYIWALTETLRL 170

  Fly   143 -------RGLQD-------MLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQ 193
                   .|||.       :|..|.|      ..::.:|.:..||::..|....||         
Mouse   171 ADHCAGAGGLQGALFTEAVLLSPGAA------LGASGDSPSPPSSWSCTNSPASSS--------- 220

  Fly   194 SAQSHSYHSASPTPSYSGSEI 214
              .|.|.:|.:.:|:..||::
Mouse   221 --NSTSPYSCTLSPASPGSDV 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 19/77 (25%)
Neurog2NP_033848.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..76
bHLH_TS_NGN2_ATOH4 104..172 CDD:381560 20/65 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..253 12/54 (22%)
Blue background indicates that the domain is not in the aligned region.

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