DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and Ferd3l

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_277057.1 Gene:Ferd3l / 114712 MGIID:2150010 Length:168 Species:Mus musculus


Alignment Length:96 Identity:26/96 - (27%)
Similarity:46/96 - (47%) Gaps:23/96 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 QSNVGPMLSSQKKKFNYNNMPYGEQLPSVARR---NARERNRVKQVNNGFVNLRQHLPQTVVNSL 118
            :..|..:|...|:|          ::.:.|:|   |.|||.|:..:|..|..||:.:|....   
Mouse    84 RGRVASLLGRPKRK----------RVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAY--- 135

  Fly   119 SNGGRGSSKKLSKVDTLRIAVEYIRGLQDML 149
                   .|:||:::|||:|:.||..:.::|
Mouse   136 -------EKRLSRIETLRLAIVYISFMTELL 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 14/49 (29%)
Peptidase_C11 <128..218 CDD:304483 9/22 (41%)
Ferd3lNP_277057.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..88 0/3 (0%)
bHLH domain 104..159 20/64 (31%)
HLH 104..156 CDD:278439 20/61 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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