DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and atoh7

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_012822645.1 Gene:atoh7 / 100493495 XenbaseID:XB-GENE-989022 Length:115 Species:Xenopus tropicalis


Alignment Length:105 Identity:35/105 - (33%)
Similarity:50/105 - (47%) Gaps:23/105 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SVARR---NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGL 145
            |..||   |||||.|::.:|..|.:||:.:||.          |..|||||.:||::|:.||..|
 Frog     8 STKRRMAANARERRRMQGLNTAFDSLRKVVPQW----------GEDKKLSKYETLQMALSYIMAL 62

  Fly   146 QDMLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQ 185
            ..:|.:...      |:.||    .|...|.:.|.:...|
 Frog    63 NRILSEAER------YSRAD----PGEWTNMHYDHIQEEQ 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 19/54 (35%)
atoh7XP_012822645.1 bHLH_TS_ATOH7 4..72 CDD:381557 28/79 (35%)

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