DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and atoh8

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_002937330.2 Gene:atoh8 / 100490889 XenbaseID:XB-GENE-877027 Length:246 Species:Xenopus tropicalis


Alignment Length:62 Identity:25/62 - (40%)
Similarity:32/62 - (51%) Gaps:10/62 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD 150
            |||||.||..::..|..||:.:|     ..|.|     :||||:..||||..||..|..:.|
 Frog   161 NARERTRVHTISAAFEALRKQVP-----CYSYG-----QKLSKLAILRIACNYILSLARLAD 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 19/54 (35%)
atoh8XP_002937330.2 bHLH_TS_ATOH8 149..216 CDD:381427 25/62 (40%)

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