DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(1)sc and tcf23

DIOPT Version :10

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_001342593.5 Gene:tcf23 / 100002924 ZFINID:ZDB-GENE-090806-5 Length:172 Species:Danio rerio


Alignment Length:92 Identity:30/92 - (32%)
Similarity:42/92 - (45%) Gaps:21/92 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGS 125
            ||..||:..|        .:..|..|   ||||:||:.:...|.:|:..||....::        
Zfish    47 GPTASSRACK--------SQTSPENA---ARERSRVRNLRQAFHSLQAALPSVPPDT-------- 92

  Fly   126 SKKLSKVDTLRIAVEYIRGLQDMLDDG 152
              ||||:|.|.:|..||..|.:.||.|
Zfish    93 --KLSKLDVLVLATNYIAHLTETLDQG 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 bHLH_TS_dAS-C_like 94..149 CDD:381587 16/54 (30%)
tcf23XP_001342593.5 None

Return to query results.
Submit another query.