DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)sc and si:ch211-246m6.4

DIOPT Version :9

Sequence 1:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_001340709.1 Gene:si:ch211-246m6.4 / 100000527 ZFINID:ZDB-GENE-050208-498 Length:193 Species:Danio rerio


Alignment Length:169 Identity:44/169 - (26%)
Similarity:69/169 - (40%) Gaps:42/169 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LQHQH-HHQTQQHQLIAPKIPLGTSQLQNMQQSQQSNVG---PMLSSQKKKFNYNNMPYGEQLPS 84
            |.|.| .|.||       .:|.....|.:...|.:.:.|   |....::.:....:    .:|..
Zfish    27 LAHAHPAHDTQ-------SLPSDPDDLDSGSDSSEKSTGAGSPTRGHREVRRRRGS----RRLAG 80

  Fly    85 VARR----NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGL 145
            |:::    |||||:|...||..|.:||..:|.          ..:.:||||::|||:|..||..|
Zfish    81 VSKQRQAANARERDRTHSVNTAFTSLRTLIPT----------EPADRKLSKIETLRLASSYISHL 135

  Fly   146 QDMLDDGTASSTRHIYNSADESSNDGSSYNDYNDSLDSS 184
            .::|..|             |...||.....|::.|.|:
Zfish   136 ANVLLLG-------------EDCRDGQPCLKYHNILQSN 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)scNP_476623.1 HLH <96..146 CDD:278439 16/49 (33%)
Peptidase_C11 <128..218 CDD:304483 19/57 (33%)
si:ch211-246m6.4XP_001340709.1 HLH 84..135 CDD:278439 22/60 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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